DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)03659 and Tap2

DIOPT Version :9

Sequence 1:NP_001260823.1 Gene:l(2)03659 / 47905 FlyBaseID:FBgn0010549 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_035660.3 Gene:Tap2 / 21355 MGIID:98484 Length:702 Species:Mus musculus


Alignment Length:775 Identity:198/775 - (25%)
Similarity:337/775 - (43%) Gaps:150/775 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   651 LSAVDASVARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQIVILANGQIKALGDYESLLKTGLI 715
            ||.:...|:..|.|..:.|.|:||...|:   .|.||.     :...|.:: ||....|||.|.:
Mouse     3 LSYLRPWVSLLLADMALLGLLQGSLGNLL---PQGLPG-----LWIEGTLR-LGVLWGLLKVGEL 58

  Fly   716 TGL-GSLSKTDKAKTEEQEPLNLNSPDNKNEVTPIKENSEQTVGGSSSGKEHVERQESGGISLAL 779
            .|| |:|.           ||...:       ||:..:....|||::|  ..|.|..|......|
Mouse    59 LGLVGTLL-----------PLLCLA-------TPLFFSLRALVGGTAS--TSVVRVASASWGWLL 103

  Fly   780 YRKYFQAGGGLVAFLVMLSSSVLAQVAVTG------------------------------GDYFL 814
                  ||.|.||    ||.:|.|.::..|                              ..:||
Mouse   104 ------AGYGAVA----LSWAVWAVLSPAGVQEKEPGQENRTLMKRLLKLSRPDLPFLIAAFFFL 158

  Fly   815 TYWVKKESTAAGH-GEMEDMESKSMDVYKYTLIIILSVIMNLSSSF--------LLFNIAKKASI 870
            ...|..|:....: |.:.|:.....|...:...|....:.::.|||        .||.:: :.::
Mouse   159 VVAVWGETLIPRYSGRVIDILGGDFDPDAFASAIFFMCLFSVGSSFSAGCRGGSFLFTMS-RINL 222

  Fly   871 RLHNTIFNRVTRADMHFFSINKHGSILNRFTKDMSQVDEVLPVVLVDVMQIALWLAGIIIVIANV 935
            |:...:|:.:.|.|:.||...|.|.:.:|.:.|.|.:...||.....:::..:.:.|:...:..|
Mouse   223 RIREQLFSSLLRQDLGFFQETKTGELNSRLSSDTSLMSRWLPFNANILLRSLVKVVGLYFFMLQV 287

  Fly   936 NP------LLLVPTLMLSVIFYHLRN-LYLKTSRD-LKRVEAINRSPVYSHLAASLNGLTTIRAL 992
            :|      ||.:|..:.:...|:.|: ..||..:| :.:...:.|..|        .||.|:|:.
Mouse   288 SPRLTFLSLLDLPLTIAAEKVYNPRHQAVLKEIQDAVAKAGQVVREAV--------GGLQTVRSF 344

  Fly   993 DAQRVLEKEFDSYQDAHSSA------------FFMYISTSQAFG---YCMNC-ICVIYISIIT-- 1039
            .|:   |:|...|::|....            .::.|....|.|   ..:|| :..|....:|  
Mouse   345 GAE---EQEVSHYKEALERCRQLWWRRDLEKDVYLVIRRVMALGMQVLILNCGVQQILAGEVTRG 406

  Fly  1040 --LSFFAFPPGNGADVGLVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYESIEPEGMLEAP 1102
              |||..:.    .:||..:...          |....::.:.:.|.|:|..|...:|.  |..|
Mouse   407 GLLSFLLYQ----EEVGQYVRNL----------VYMYGDMLSNVGAAEKVFSYLDRKPN--LPQP 455

  Fly  1103 DDKKPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLINALF 1167
            ....||  |.| |.:.|::::..| |....:.||:.|:|.:.|.....:||..|:|||: :.||.
Mouse   456 GILAPP--WLE-GRVEFQDVSFSY-PRRPEKPVLQGLTFTLHPGTVTALVGPNGSGKST-VAALL 515

  Fly  1168 RLSY--TDGSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLD-PFDEYSDEKLWGCLE 1229
            :..|  |.|.:|:|.....:...|.|.||:.::.||||||||:::.|:. ...:..|.::....:
Mouse   516 QNLYQPTGGQLLLDGEPLTEYDHHYLHRQVVLVGQEPVLFSGSVKDNIAYGLRDCEDAQVMAAAQ 580

  Fly  1230 EVKLKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLIQ 1294
            .....:.:.::.:|:.::|.|.|...:|||:|.:.:|||::|..|:|::||||:.:|.|.:..:|
Mouse   581 AACADDFIGEMTNGINTEIGEKGGQLAVGQKQRLAIARALVRNPRVLILDEATSALDAQCEQALQ 645

  Fly  1295 ATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGSPYELMTKSDSKVFHNLVNQ 1354
             ..||: .|.|:|.|||||||:.::|:|:|:..||:||..     ..:....|:.:||.|
Mouse   646 -NWRSQ-GDRTMLVIAHRLHTVQNADQVLVLKQGRLVEHD-----QLRDGQDVYAHLVQQ 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)03659NP_001260823.1 CFTR_protein 89..1343 CDD:273530 194/762 (25%)
ABC_membrane 171..437 CDD:294371
ABCC_MRP_domain1 499..699 CDD:213217 13/47 (28%)
ABC_membrane 799..1045 CDD:294371 61/312 (20%)
ABCC_MRP_domain2 1115..1336 CDD:213211 76/223 (34%)
Tap2NP_035660.3 3a01208 1..696 CDD:273363 195/771 (25%)
ABC_membrane 155..415 CDD:279056 58/271 (21%)
Part of the peptide-binding site. /evidence=ECO:0000250|UniProtKB:Q03519 300..388 20/98 (20%)
Part of the peptide-binding site. /evidence=ECO:0000250|UniProtKB:Q03519 413..432 3/32 (9%)
P-loop_NTPase 456..679 CDD:304359 77/229 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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