DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)03659 and haf-2

DIOPT Version :9

Sequence 1:NP_001260823.1 Gene:l(2)03659 / 47905 FlyBaseID:FBgn0010549 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_495537.2 Gene:haf-2 / 174204 WormBaseID:WBGene00001812 Length:773 Species:Caenorhabditis elegans


Alignment Length:571 Identity:143/571 - (25%)
Similarity:258/571 - (45%) Gaps:121/571 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   846 IIILSVIMNLSSSF-----LLFNIAKK-ASIRLHNTIFNRVTRADMHFFSINKHGSILNRFTKDM 904
            ||:|:.:...||.|     ..|:.|.. .::|:...:|..:.|.|:.|:...|.|..::|.|.|.
 Worm   252 IIVLTCLTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIAFYDTAKTGDTMSRLTSDC 316

  Fly   905 SQVDEVLP----------VVLVDVMQIAL---WLAGIIIVIANVNPLLLVPTLMLSVIFYHLRNL 956
            ..:...:.          |:|:..:...:   |...::..||       ||  ::..|.....:.
 Worm   317 QTISSTVSTNVNVFMRNGVMLIGALAFMILMSWRLAMVTFIA-------VP--LVGFITKAYSSF 372

  Fly   957 YLKTSRDLKRVEAINRSPVYSHLAASLNGLTTIRALDAQRVLEKEFDSYQDAHSS---------- 1011
            |.|.|..|::..|..     :.:|..:  ::|:|.:.:....:||...::|..||          
 Worm   373 YDKISEKLQQTIAET-----NQMAEEV--VSTMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSI 430

  Fly  1012 AFFMYISTSQAFGYCMNCICVIYISIITLSFFAFPPGNGADVGLVITQAMGLIDMVQWGVRQTAE 1076
            |:..|...::   :|.|.|.|..:         |..|:     ||:|..|....::.:.:.|...
 Worm   431 AYLFYTWNNE---FCDNAILVAVL---------FYGGH-----LVMTGKMEKEQLITFLLYQMQL 478

  Fly  1077 LENTMTAVERVVEYESIEPEGMLEAPD---------DKKP---------PKTWPEQGEIIFKELN 1123
            .||        :.|.|....|::||..         ::||         |..   .|.|.|..:.
 Worm   479 GEN--------LYYLSYVMSGLMEAVGASRKVFDLMNRKPQFELDGMQRPFV---NGNITFSHVG 532

  Fly  1124 LRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLINALFRLSYTD-GSVLID---TRDTR 1184
            ..| |:.....|||.|:..|:..|.|.:||.:|.||||:::.:......| |||.:|   .:|..
 Worm   533 FTY-PSRPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDGVPIKDIN 596

  Fly  1185 QMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEKLWGC--------LEEVKLKEV---VS 1238
            .:..|   ::::::.|||||::|::|:|:          |:||        |...|:..|   |.
 Worm   597 HVYYH---QKVALVAQEPVLYNGSVRHNI----------LYGCDFATEDDMLNASKMANVHDFVM 648

  Fly  1239 DLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLIQATIRSKFRD 1303
            :|..|..:...|.|...|.||:|.:.:|||::|...:|::||||:.:|.:::.|:|..:....::
 Worm   649 ELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNPAVLILDEATSALDTESEALVQQALSRCAQE 713

  Fly  1304 CTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGSPYELMTKSDSKVFHNLVNQ 1354
            .||:.:||||.||..::|:.|:..|.:|:.|:..||||.:|. ::::||::
 Worm   714 RTVIIVAHRLSTIEKANKIAVIVKGCLVQMGTHTELMTDTDG-MYYSLVSR 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)03659NP_001260823.1 CFTR_protein 89..1343 CDD:273530 140/558 (25%)
ABC_membrane 171..437 CDD:294371
ABCC_MRP_domain1 499..699 CDD:213217
ABC_membrane 799..1045 CDD:294371 45/227 (20%)
ABCC_MRP_domain2 1115..1336 CDD:213211 74/235 (31%)
haf-2NP_495537.2 3a01208 15..761 CDD:273363 141/567 (25%)
ABC_membrane 215..478 CDD:279056 52/258 (20%)
ABC_MTABC3_MDL1_MDL2 526..764 CDD:213216 80/253 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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