DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)03659 and abcc4

DIOPT Version :9

Sequence 1:NP_001260823.1 Gene:l(2)03659 / 47905 FlyBaseID:FBgn0010549 Length:1374 Species:Drosophila melanogaster
Sequence 2:XP_002939329.2 Gene:abcc4 / 100491006 XenbaseID:XB-GENE-957302 Length:1324 Species:Xenopus tropicalis


Alignment Length:1320 Identity:552/1320 - (41%)
Similarity:829/1320 - (62%) Gaps:70/1320 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NPRARSNFISSLCFWYTIPIFRKGYRKTLDSTDLYRPLEEQKSDILGNRLCASWEREL---KNDG 150
            ||...:||.|.:.||:..|:|..|:::.|:..|:|..|.|..|..||..|...||:||   :|:|
 Frog    11 NPSQHANFCSKIFFWWLNPLFILGHKRKLEEDDMYEVLPEDASRKLGEELQWYWEKELQKAQNEG 75

  Fly   151 RSPSLVRALLRVFGWQLGFPGLAIFV-VELGLRTLQPIFLVKLISYFSGEPDAANAGFYYAVAQI 214
            |.|.|.:|::|.. |:. |..|.:|. .|..:|.:|||||..:||||  |...||.....|.|.|
 Frog    76 RKPRLTKAIIRCH-WKT-FSVLGLFTFFEESIRVVQPIFLGNVISYF--ERYDANDSAVLANAYI 136

  Fly   215 ---VISALTVMILTPTTFGIHHVCF--------KMRVAMGSMIFRKALRLTKGALGDTTSGHVVN 268
               .:||.|:::..     :||:.|        |:||||..||:||||||:..|:|.||:|.:||
 Frog   137 NAAALSACTLILAV-----VHHIYFYHLLRAGMKLRVAMCHMIYRKALRLSNTAMGKTTTGQIVN 196

  Fly   269 LISNDIPRLDSAPYTVHYLWVGPLQVLVITYLMYQEIGISAVFGVLFMLLFMPIQMYLGTRTSAI 333
            |:|||:.:.|.....:|:||.||||.:.:|.|::.|||.|.:.|:..:::.||:|:.||...:::
 Frog   197 LLSNDVNKFDQVTIFLHFLWAGPLQAIAVTVLLWMEIGPSCLAGMAVLIILMPLQLCLGKFFTSL 261

  Fly   334 QLKAAERTDNRIRMVNEIISAIQVLKMYAWEQPFEQMVTHAREKEMNTIRQGQYIRGFDFARRIV 398
            :.|.|..||.|||.:||:||.::::|||||||.|.::|.:.|:||:|.:.:..|:|..:.|...|
 Frog   262 RGKTAAFTDTRIRTMNEVISGMRIIKMYAWEQSFTELVNNIRKKEINKVLRSSYLRALNLASFFV 326

  Fly   399 LSRVAIFLSLVGYVILGKVFTPEIAFMITAYYNVLLAAMSIYVPSAIIQTAQFLTSIRRVEQFMQ 463
            .|::.:|::...||:||.|.:....|:..:.|:.:...::::.|||:.:.::...||||::.|:.
 Frog   327 ASKIILFVTFTTYVLLGNVISASRVFVAVSLYSAVRLTVTLFFPSAVERASEAKVSIRRIKNFLL 391

  Fly   464 SEELGSSDKSEGPSKDTVPGNPPSNNNEADLLKSAISIRDLKAKWDPNSPDYTLSGINLEIKPGS 528
            .:|:..            |.......||.:||   :.|:|:...||......||..|:..::||.
 Frog   392 LDEIFK------------PALELPEENEENLL---VQIQDVTCYWDKTLEIPTLQNISCSVRPGE 441

  Fly   529 VVAVIGLTGSGKSSLIQAILGELKANSGQLQVNGSLSYTSQESWLFSGTVRQNILFGQPMDSQRY 593
            ::||||..|:|||||:.|:||||..:.|.:.:.|.::|.||:.|:||||||.|||||:....::|
 Frog   442 LLAVIGPVGAGKSSLLSAVLGELPKDKGFVDIRGRIAYVSQQPWVFSGTVRSNILFGKEYVQEKY 506

  Fly   594 EEVVKKCALERDFDLLPLRDNTIVGERGATLSGGQKARISLARSVYRKASIYLLDDPLSAVDASV 658
            ::|::.|||::|...|...|.||:|:||.|||||||||::|||:||:.|.|||||||||||||.|
 Frog   507 DKVLRVCALKKDMLQLDDGDLTIIGDRGVTLSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEV 571

  Fly   659 ARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQIVILANGQIKALGDYESLLKTGLITGLGSLSK 723
            .||||::|:...||....:|||||.|:|....||:||..|::...|.::.||::|:  ...||.|
 Frog   572 GRHLFEKCICQALRKKLCILVTHQLQYLSAAKQILILKEGRMVGKGTFQELLQSGI--DFASLLK 634

  Fly   724 T-DKAKTEEQEPLNLNSPDNKNEVTPIKENSEQTVGGSSSG------KEHV------ERQESGGI 775
            : ::.:::.||...:.|..|:........:.:.||.....|      .|.|      |.:..|.:
 Frog   635 SEEEEQSQSQEGQLIKSSRNRTFSQSSVWSQDSTVQSHKEGATDNLAAEPVLTAIPEESRSEGTV 699

  Fly   776 SLALYRKYFQAGGGLVAFLVMLSSSVLAQVAVTGGDYFLTYWVKKES----TAAGHGEMEDMESK 836
            ...:|:|||.:|...:...|:|..::|:||.....|::|:||..::.    |:..:......|..
 Frog   700 GFKVYKKYFTSGSSYLMLFVVLLLNILSQVTYVLQDWWLSYWANEQGKLNITSGTNSTGSKTEQL 764

  Fly   837 SMDVY--KYTLIIILSVIMNLSSSFLLFNIAKKASIRLHNTIFNRVTRADMHFFSINKHGSILNR 899
            .:.:|  .|..:.:.::|..:....|:|::...|:..|||.:|..:.:|.:.||..|..|.||||
 Frog   765 DLTLYLGVYAGLTVATIIFGVLRCLLVFHVLVCAAQALHNQMFQSLLKAPVLFFDRNPIGRILNR 829

  Fly   900 FTKDMSQVDEVLPVVLVDVMQIALWLAGIIIVIANVNPLLLVPTLMLSVIFYHLRNLYLKTSRDL 964
            |:||:..:|:::|...:|.||:.|.:.|:|.|...|.|.:|:|.|.|.::||.||..:|.||||:
 Frog   830 FSKDIGHLDDLMPFTFLDFMQVLLQILGVIAVAVAVIPWILIPLLPLVIVFYFLRRYFLDTSRDI 894

  Fly   965 KRVEAINRSPVYSHLAASLNGLTTIRALDAQRVLEKEFDSYQDAHSSAFFMYISTSQAFGYCMNC 1029
            ||:|:..||||:|||::||.||.||||..|::..:..||:.||.||.|:|::::||:.....::.
 Frog   895 KRLESTTRSPVFSHLSSSLQGLWTIRAFKAEKRFQDLFDAQQDLHSEAWFLFLTTSRWLAVRLDA 959

  Fly  1030 ICVIYISIITLSFFAFPPGNGAD---VGLVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYE 1091
            ||.::  :|.::|.:.......|   |||.::..|.::...||||||:||:||.|.:.|||:||.
 Frog   960 ICAVF--VIAIAFGSIILAENLDAGQVGLALSYGMTIMGSFQWGVRQSAEVENLMISAERVMEYT 1022

  Fly  1092 SIEPEGMLEAPDDKKPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTG 1156
            .:|.|...|:.:  .||..||.:|.|.|:.:|..|:.:...  ||:.|:.:|:|:||||||||||
 Frog  1023 QLEKEAEWESKN--PPPADWPNKGMITFENVNFSYSLDGPV--VLRHLNALIRPKEKVGIVGRTG 1083

  Fly  1157 AGKSSLINALFRLSYTDGSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSD 1221
            |||||||.|||||:..:|.:.||...|.::||||||:::||||||||||:||||.|||||||::|
 Frog  1084 AGKSSLIAALFRLAEPEGKIWIDKYLTSKLGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFDEHAD 1148

  Fly  1222 EKLWGCLEEVKLKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVD 1286
            |:||..||||:|||.|.:||..:.:::||.|:||||||||||||||||||.||||::||||||||
 Frog  1149 EELWDVLEEVQLKEAVEELPGKIETQLSESGSNFSVGQRQLVCLARAILRRNRILIIDEATANVD 1213

  Fly  1287 PQTDGLIQATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGSPYELMTKSDSKVFHNL 1351
            |:||.|||.|||.||.:||||||||||:|||||||:||:|||||.|:..||.|:...:| :|:.:
 Frog  1214 PRTDELIQKTIREKFAECTVLTIAHRLNTIIDSDKIMVLDAGRVKEYDEPYLLLQNKES-LFYKM 1277

  Fly  1352 VNQSGRASYEGLLKIAQETF 1371
            |.|.|:|....|.:.|::.:
 Frog  1278 VQQVGKAEATALNEAAKQVY 1297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)03659NP_001260823.1 CFTR_protein 89..1343 CDD:273530 544/1290 (42%)
ABC_membrane 171..437 CDD:294371 106/277 (38%)
ABCC_MRP_domain1 499..699 CDD:213217 101/199 (51%)
ABC_membrane 799..1045 CDD:294371 88/251 (35%)
ABCC_MRP_domain2 1115..1336 CDD:213211 146/220 (66%)
abcc4XP_002939329.2 PLN03130 2..1289 CDD:215595 550/1310 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 225 1.000 Domainoid score I2471
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74563
Inparanoid 1 1.050 1027 1.000 Inparanoid score I277
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 1 1.000 - - FOG0001028
OrthoInspector 1 1.000 - - otm47437
Panther 1 1.100 - - O PTHR24223
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X771
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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