DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)03659 and cftr

DIOPT Version :9

Sequence 1:NP_001260823.1 Gene:l(2)03659 / 47905 FlyBaseID:FBgn0010549 Length:1374 Species:Drosophila melanogaster
Sequence 2:XP_031754831.1 Gene:cftr / 100486085 XenbaseID:XB-GENE-853972 Length:1485 Species:Xenopus tropicalis


Alignment Length:1494 Identity:407/1494 - (27%)
Similarity:713/1494 - (47%) Gaps:267/1494 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 LPENPRARSNFISSLCFWYTIPIFRKGYRKTLDSTDLYRPLEEQKSDILGNRLCASWERELKNDG 150
            :..:|..:::..|.:.|.:|.||..||||:.|:.:|:|:......:|.|..||...|:||:....
 Frog     1 MQRSPLEKASIFSQIFFSWTKPILWKGYRQRLELSDIYQIHPGDSADNLSERLEREWDREVATSK 65

  Fly   151 RSPSLVRALLRVFGWQLGFPGLAIFVVELGLRTLQPIFLVKLI-SYFSGEPDAANAGFYYAVAQI 214
            ::|.|:.||.|.|.|:..|.|:.:::.|: .:.:||:.|.::| ||........:..:|.|:...
 Frog    66 KNPKLINALKRCFFWKFLFYGILLYLGEV-TKAVQPLLLGRIIASYDRDNEHERSIAYYLAIGLC 129

  Fly   215 VISALTVMILTPTTFGIHHVCFKMRVAMGSMIFRKALRLTKGALGDTTSGHVVNLISNDIPRLDS 279
            ::..:.:::|.|..||:||:..:||:||.|:|::|.|:|:...|...::|.:|:|:||::.:.|.
 Frog   130 LLFVVRMLLLHPAIFGLHHIGMQMRIAMFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDE 194

  Fly   280 APYTVHYLWVGPLQVLVITYLMYQEIGISAVFGVLFMLLFMPIQMYLGTRTSAIQLKAAERTDNR 344
            .....|::|:.|||||::..|::..:..||..|:.|:::....|.:||......:.|.|.:.:.|
 Frog   195 GLALAHFVWIAPLQVLLLMGLLWDLLQASAFCGLGFLIILALFQAWLGRMMMKYRDKRAGKINER 259

  Fly   345 IRMVNEIISAIQVLKMYAWEQPFEQMVTHAREKEMNTIRQGQYIRGFDFARRIVLSRVAIFLSLV 409
            :.:.:|||..||.:|.|.||...|:::...||.|:...|:..|:|.|:.:.........:||.:|
 Frog   260 LVITSEIIENIQSVKAYCWESAMEKIIETIRETELKLTRKAAYVRYFNSSAFFFSGFFVVFLCIV 324

  Fly   410 GYVILG-----KVFTPEIAFMITAYYNVLLAAMSIYVPSAIIQTAQFLTSIRRVEQFMQSEELGS 469
            .:::|.     |:|| .|:|.|     ||..|::...|.|:......|..|.::::|:|.||..|
 Frog   325 PHLLLDGISLRKIFT-TISFSI-----VLRMAVTRQFPWAVQTWYDSLGVINKIQEFLQKEEYKS 383

  Fly   470 SDKSEGPSKDTVPGNPPSNNNEADLLKSAISIRDLKAKWDPN----------------------S 512
            .                    |.:|..:.:::.::.|.||..                      |
 Frog   384 L--------------------EYNLTTTEVAMENVSASWDEGIGEFFEKAKQEVNGGNISNEDPS 428

  Fly   513 PDYT---------LSGINLEIKPGSVVAVIGLTGSGKSSLIQAILGELKANSGQLQVNGSLSYTS 568
            |.::         |..||.:|:.|.::|:.|.||:||:||:..|:|||:.::|:::.:|.:|::.
 Frog   429 PFFSNFSLHVAPVLRNINFKIEKGQLLAIAGSTGAGKTSLLMMIMGELEPSAGKIKHSGRISFSP 493

  Fly   569 QESWLFSGTVRQNILFGQPMDSQRYEEVVKKCALERDFDLLPLRDNTIVGERGATLSGGQKARIS 633
            |.||:..||:::||:||...|..||..|:|.|.||.|....|.:|||::||.|.||||||:||||
 Frog   494 QVSWIMPGTIKENIIFGVSYDQYRYLSVIKACQLEEDISKFPEKDNTVLGEGGITLSGGQRARIS 558

  Fly   634 LARSVYRKASIYLLDDPLSAVDASVARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQIVILANG 698
            |||:||:.|.:||:|.|.|.:|....:.:|:.||...:...|.:|||.:.:.|...|:::||..|
 Frog   559 LARAVYKDADLYLMDSPFSYLDLFTEKEIFESCVCKLMANKTRILVTSKVEQLKKADKVLILHEG 623

  Fly   699 ------------------------------------------------------------QIKAL 703
                                                                        ..|.:
 Frog   624 SCYFYGTFSELQDQRPEFSSHLTGFDHFNAERRNSIITETLRRCSIDSDPTAVRNEVKNKSFKQV 688

  Fly   704 GDYESLLKTGLITGLGSLSK---TDKAKTE----EQEPLNLNSPDNKNEVTPIKENSEQTV---- 757
            .|:....|..:|....|..|   ..|::.:    |:|.:..|..:.|..:.|..|..|.::    
 Frog   689 ADFSEKRKNSVINPRKSSRKFSIMQKSQPQMSGIEEEDIPPNQGERKLSLVPESEQGEASLPRSN 753

  Fly   758 ----GGSSSGKEH-------------------------VERQESGGISLA--------------- 778
                |.:..|:..                         |.:...|..|.:               
 Frog   754 VLNTGPTFQGRRRQSVLNLMTRTSVSQGSNAFATRNTSVRKMSVGSFSNSSFEVDIYNRRLSQDS 818

  Fly   779 -------------------------------LYRKYFQAGGGLVAFLVMLSSSVLAQVAVTGGDY 812
                                           .|.::..|....:..||......||:|..:... 
 Frog   819 ILEVSEEINEEDLKECFLDDTDSPSPTTTWNTYIRFLTAHKNFIFILVFCIVIFLAEVIASSAG- 882

  Fly   813 FLTYWVKKESTAAGHGEMEDMESKSMDVYKYTLIIILSVIMNLSSSFLLFNI------------- 864
               .|:.|.:....:....:..|::.|        |||||:..:|.:.:|.|             
 Frog   883 ---LWIIKRNAPVSNMTSNENISEASD--------ILSVIVTHTSFYYVFYIYVGVADSLLALGI 936

  Fly   865 ---------AKKASIRLHNTIFNRVTRADMHFFSINKHGSILNRFTKDMSQVDEVLPVVLVDVMQ 920
                     ....|..||..:.:.:..|.|..|:..:.|.|||||:||.:.:|::||:.:.|..|
 Frog   937 FRGLPLVHSLISVSRVLHKKMLHSILHAPMSTFNTMRAGRILNRFSKDTAILDDILPLSIFDFTQ 1001

  Fly   921 IALWLAGIIIVIANVNPLLLVPTLMLSVIFYHLRNLYLKTSRDLKRVEAINRSPVYSHLAASLNG 985
            :.|.:.|.|.|::.:.|.:.:.|:.:...|..||:.:|.||:.||::|:..|||:::||..||.|
 Frog  1002 LVLIVIGAITVVSLLEPYIFLATVPVIAAFILLRSYFLHTSQQLKQLESEARSPIFAHLITSLKG 1066

  Fly   986 LTTIRALDAQRVLEKEFDSYQDAHSSAFFMYISTSQAFGYCMNCICVIYISIITLSFFAFPPGNG 1050
            |.|:||...|...|..|....:.|::.:|:|:||.:.|...:..|.||:  .|.:||.:......
 Frog  1067 LWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMTIEMIFVIF--FIAVSFISIATSGA 1129

  Fly  1051 AD--VGLVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYESIEPEGMLEAPDDK-------- 1105
            .:  ||:|:|.||.:::.:||.|..:.::::.|.:|.|:..:..:..|.::...:.|        
 Frog  1130 GEEKVGIVLTLAMNIMNTLQWAVNASIDVDSLMRSVSRIFRFIDMPREELIHDNNHKDDQLSEVL 1194

  Fly  1106 -------KPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIVGRTGAGKSSLI 1163
                   |..:.||..|::..|.|:.:|...  ...||:::||.:.|.::||::||||:|||:|:
 Frog  1195 IYENDYIKKNQVWPSGGQMTVKNLSAKYKDG--GHTVLENISFSLNPGQRVGLLGRTGSGKSTLL 1257

  Fly  1164 NALFRLSYTDGSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEKLWGCL 1228
            :|..||..|.|.:.||....:.:.|...|:...::||:..:||||:|.||||:.::|||:|....
 Frog  1258 SAFLRLLSTQGDIQIDGVSWQTIPLQKWRKAFGVVPQKVFIFSGTIRKNLDPYGKWSDEELLKVT 1322

  Fly  1229 EEVKLKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDGLI 1293
            |||.||.::...|..|...:.:||...|.|.:|||||||::|.:.:||::||.:|::||.|..:|
 Frog  1323 EEVGLKSIIDQFPGQLDFVLLDGGCVLSHGHKQLVCLARSVLSKAKILLLDEPSAHLDPITFQII 1387

  Fly  1294 QATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGSPYELMTKSDSKVFHNLVNQSGR 1357
            :.|::..|.:|||:...|||..:::....:|::...|.::.|..:||  ::...|...::||.|
 Frog  1388 RKTLKHAFANCTVILSEHRLEAMLECQHFLVIEDNTVRQYDSIQKLM--NEKSFFKQAISQSDR 1449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)03659NP_001260823.1 CFTR_protein 89..1343 CDD:273530 403/1475 (27%)
ABC_membrane 171..437 CDD:294371 79/271 (29%)
ABCC_MRP_domain1 499..699 CDD:213217 84/290 (29%)
ABC_membrane 799..1045 CDD:294371 76/267 (28%)
ABCC_MRP_domain2 1115..1336 CDD:213211 81/220 (37%)
cftrXP_031754831.1 CFTR_protein 1..1472 CDD:273530 407/1494 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24223
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

Return to query results.
Submit another query.