DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdmc and MTD1

DIOPT Version :9

Sequence 1:NP_476929.1 Gene:Nmdmc / 47895 FlyBaseID:FBgn0010222 Length:309 Species:Drosophila melanogaster
Sequence 2:NP_013006.3 Gene:MTD1 / 853955 SGDID:S000001788 Length:320 Species:Saccharomyces cerevisiae


Alignment Length:340 Identity:84/340 - (24%)
Similarity:134/340 - (39%) Gaps:73/340 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPH------LTAVIVGEDPASEKYVANKMVAC 63
            |...:.|....:|:...|::.:.::     .|.|.|      |...:...|||::.|........
Yeast     2 SKPGRTILASKVAETFNTEIINNVE-----EYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTS 61

  Fly    64 REVGISSETKRLPASTTQEELLQLIADLNKDPQVTGILVQLPVPEHINERTICNAVDVDKDVDGF 128
            ..:|...:.:.:......||   .|...|.|..|.||:|..||..:..::.:...|..:|||:|.
Yeast    62 ESMGFRYDLRVIEDKDFLEE---AIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGL 123

  Fly   129 NEV---NIGRTA--LDME----ANIPATPLGVKRLLEHMKI---------ETLGRNAVVVGRSKN 175
            |.|   |:....  ||.|    :.:|.|||.:.::||.:||         ...|:..:|:.||:.
Yeast   124 NHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEI 188

  Fly   176 VSLPMAILLHADGKYATKAMDATVTICHRYTP-----------------PKELARHCRQADIIVV 223
            |..|:|.||..||  || .....|....::|.                 .::|.:.| ..|..||
Yeast   189 VGRPLAALLANDG--AT-VYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKC-SLDSDVV 249

  Fly   224 AVGKPGLITK---DMVKPGACVIDVGINRIKDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGP 285
            ..|.|....|   :.:|.||..|:..       .|..|.       ::|::.|....|:.|.|  
Yeast   250 ITGVPSENYKFPTEYIKEGAVCINFA-------CTKNFS-------DDVKEKASLYVPMTGKV-- 298

  Fly   286 MTVAMLMHNTLKAAR 300
             |:|||:.|.|:..|
Yeast   299 -TIAMLLRNMLRLVR 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NmdmcNP_476929.1 FolD 9..304 CDD:223268 83/336 (25%)
THF_DHG_CYH 10..126 CDD:279147 26/121 (21%)
THF_DHG_CYH_C 129..303 CDD:280955 55/210 (26%)
MTD1NP_013006.3 THF_DHG_CYH 8..121 CDD:395619 26/120 (22%)
NAD_bind_m-THF_DH 116..316 CDD:133447 59/218 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 66 1.000 Inparanoid score I1725
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.820

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