DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdmc and mthfd1a

DIOPT Version :9

Sequence 1:NP_476929.1 Gene:Nmdmc / 47895 FlyBaseID:FBgn0010222 Length:309 Species:Drosophila melanogaster
Sequence 2:XP_021329049.1 Gene:mthfd1a / 567587 ZFINID:ZDB-GENE-041001-127 Length:919 Species:Danio rerio


Alignment Length:305 Identity:126/305 - (41%)
Similarity:183/305 - (60%) Gaps:24/305 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MAQIIDGKAIAQEVRTQLAHELKGMEAAGYP--KPHLTAVIVGEDPASEKYVANKMVACREVGIS 69
            :|.::.|...:|:|:.:|..|::.|::. :|  :|.|..:.||:...|..|::.|:.|..|:||:
Zfish    24 LATVVSGNKTSQQVKQRLKEEVEQMKSQ-FPGFRPGLVVLQVGDREDSNLYISMKLKAAAEIGIN 87

  Fly    70 SETKRLPASTTQEELLQLIADLNKDPQVTGILVQLPVP--EHINERTICNAVDVDKDVDGFNEVN 132
            :...|||.:.|:.|:|:.|..:|::|...|::||||:.  ..||...|.|||..:|||||...:|
Zfish    88 ANHIRLPETATENEVLRNIVAVNENPAFHGLIVQLPLDSINPINTEKITNAVAPEKDVDGLTSIN 152

  Fly   133 IGRTAL-DM-EANIPATPLGVKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILL---HADGKYAT 192
            .|:.:. |: :..||.||.|...|:....:..:|:||||:||||.|..||..||   |       
Zfish   153 AGKLSRGDLGDCFIPCTPNGCMELISQTGVSVMGKNAVVIGRSKIVGAPMHDLLLWSH------- 210

  Fly   193 KAMDATVTICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRIKDESTGQ 257
                ||||.||..||  :||....:|||:||..|:..::..:.||.||.|||.|||.|.|||...
Zfish   211 ----ATVTTCHSKTP--DLAEQVGKADILVVGAGRAEMVKGEWVKEGAVVIDCGINHIPDESKAS 269

  Fly   258 FK-LVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAARK 301
            .| :||||.:...:|.||.|||||||||||||||||.||:::|::
Zfish   270 GKRVVGDVHYPSAKQRAGFITPVPGGVGPMTVAMLMKNTVESAKR 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NmdmcNP_476929.1 FolD 9..304 CDD:223268 125/303 (41%)
THF_DHG_CYH 10..126 CDD:279147 40/119 (34%)
THF_DHG_CYH_C 129..303 CDD:280955 82/179 (46%)
mthfd1aXP_021329049.1 FolD 26..315 CDD:223268 125/303 (41%)
FTHFS 353..897 CDD:238266
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100216
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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