DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdmc and MTHFD2

DIOPT Version :9

Sequence 1:NP_476929.1 Gene:Nmdmc / 47895 FlyBaseID:FBgn0010222 Length:309 Species:Drosophila melanogaster
Sequence 2:NP_006627.2 Gene:MTHFD2 / 10797 HGNCID:7434 Length:350 Species:Homo sapiens


Alignment Length:304 Identity:171/304 - (56%)
Similarity:221/304 - (72%) Gaps:2/304 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDPASEKYVANKMVACREVGISS 70
            |.|.:|.|:.:||:::.::..|::...|:|..:|||:.::|||:|||..||.||..|...|||:|
Human    35 NEAVVISGRKLAQQIKQEVRQEVEEWVASGNKRPHLSVILVGENPASHSYVLNKTRAAAVVGINS 99

  Fly    71 ETKRLPASTTQEELLQLIADLNKDPQVTGILVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGR 135
            ||...|||.::||||.||..||.|..|.|:|||||:||||:||.|||||..|||||||:.:|:||
Human   100 ETIMKPASISEEELLNLINKLNNDDNVDGLLVQLPLPEHIDERRICNAVSPDKDVDGFHVINVGR 164

  Fly   136 TALDMEANIPATPLGVKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT 200
            ..||..:.:||||.||..:::...|.|||:|.||.||||||.:|:|:|||.||.:.....|||||
Human   165 MCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGAHERPGGDATVT 229

  Fly   201 ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRIKDESTGQFKLVGDVD 265
            |.|||||.::|.:|...|||::.|.|.|.|||.||:|.||.||||||||:.|..|.:.|||||||
Human   230 ISHRYTPKEQLKKHTILADIVISAAGIPNLITADMIKEGAAVIDVGINRVHDPVTAKPKLVGDVD 294

  Fly   266 FEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAARK--QFDDRK 307
            ||.|||.||:|||||||||||||||||.||:.||:|  :.::|:
Human   295 FEGVRQKAGYITPVPGGVGPMTVAMLMKNTIIAAKKVLRLEERE 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NmdmcNP_476929.1 FolD 9..304 CDD:223268 168/296 (57%)
THF_DHG_CYH 10..126 CDD:279147 60/115 (52%)
THF_DHG_CYH_C 129..303 CDD:280955 104/175 (59%)
MTHFD2NP_006627.2 FolD 39..334 CDD:223268 168/294 (57%)
THF_DHG_CYH 39..155 CDD:279147 60/115 (52%)
Substrate binding. /evidence=ECO:0000269|PubMed:27899380 84..88 2/3 (67%)
Substrate binding. /evidence=ECO:0000269|PubMed:27899380 131..133 1/1 (100%)
NAD_bind_m-THF_DH_Cyclohyd 150..329 CDD:133448 109/178 (61%)
Substrate binding. /evidence=ECO:0000269|PubMed:27899380 309..313 3/3 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 208 1.000 Domainoid score I2865
eggNOG 1 0.900 - - E1_COG0190
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21321
Inparanoid 1 1.050 338 1.000 Inparanoid score I2386
Isobase 1 0.950 - 0 Normalized mean entropy S1545
OMA 1 1.010 - - QHG61254
OrthoDB 1 1.010 - - D1004679at2759
OrthoFinder 1 1.000 - - FOG0001810
OrthoInspector 1 1.000 - - otm41721
orthoMCL 1 0.900 - - OOG6_100216
Panther 1 1.100 - - O PTHR48099
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4671
SonicParanoid 1 1.000 - - X1169
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.820

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