DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdmc and mthfd2

DIOPT Version :9

Sequence 1:NP_476929.1 Gene:Nmdmc / 47895 FlyBaseID:FBgn0010222 Length:309 Species:Drosophila melanogaster
Sequence 2:NP_001123716.1 Gene:mthfd2 / 100170462 XenbaseID:XB-GENE-941965 Length:335 Species:Xenopus tropicalis


Alignment Length:296 Identity:173/296 - (58%)
Similarity:218/296 - (73%) Gaps:0/296 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDPASEKYVANKMVACREVGISS 70
            |.|.:|.|:.:|:::|.:..||::...|||..:|||:.|:||::|||..||.||..|..:|||||
 Frog    28 NEAVVISGRKLARQIRQEARHEVEQWVAAGNKRPHLSVVLVGDNPASHSYVLNKTKAAADVGISS 92

  Fly    71 ETKRLPASTTQEELLQLIADLNKDPQVTGILVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGR 135
            ||...|.|.|:||||.||..||.|..|.|:|||||:|||::||.|||||..|||||||:.||:||
 Frog    93 ETILKPTSITEEELLDLINKLNNDDHVDGLLVQLPLPEHLDERAICNAVTPDKDVDGFHVVNVGR 157

  Fly   136 TALDMEANIPATPLGVKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT 200
            ..||..:.:||||.||..:::...|.|||:|.||.||||||.:|:|:|||.||::.....|||||
 Frog   158 MCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGRHERPGGDATVT 222

  Fly   201 ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRIKDESTGQFKLVGDVD 265
            |.|||||.::|..|.:.|||:|.|.|.|.|||.||:|.||.||||||||::|..||:.|||||||
 Frog   223 ISHRYTPKEQLKMHTKIADIVVAAAGIPNLITADMIKEGAAVIDVGINRVQDPVTGKPKLVGDVD 287

  Fly   266 FEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAARK 301
            ||.||:.|.:|||||||||||||||||.||:.||:|
 Frog   288 FEGVRKKASYITPVPGGVGPMTVAMLMKNTIIAAKK 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NmdmcNP_476929.1 FolD 9..304 CDD:223268 171/293 (58%)
THF_DHG_CYH 10..126 CDD:279147 62/115 (54%)
THF_DHG_CYH_C 129..303 CDD:280955 105/173 (61%)
mthfd2NP_001123716.1 FolD 32..326 CDD:223268 171/292 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2747
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H21321
Inparanoid 1 1.050 344 1.000 Inparanoid score I2270
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1004679at2759
OrthoFinder 1 1.000 - - FOG0001810
OrthoInspector 1 1.000 - - otm48943
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4671
SonicParanoid 1 1.000 - - X1169
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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