DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Duxf3

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:XP_030101272.1 Gene:Duxf3 / 74399 MGIID:1921649 Length:674 Species:Mus musculus


Alignment Length:232 Identity:71/232 - (30%)
Similarity:88/232 - (37%) Gaps:41/232 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 RRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKRE---KFM 215
            ||.||..|:.|...|.:|||:...|...|||:||....|.|..:.:|||||||:.|.|.   ...
Mouse   113 RRPRTRLTSLQRRILGQAFERNPRPGFATREELARDTGLPEDTIHIWFQNRRARRRHRRGRPTAQ 177

  Fly   216 NQDKAGYLLPEQGLPEFPLG-------------IPLPPHGLPGHPGSMQSEFWPPHFALH-QHFN 266
            :||    ||..||....|.|             :|....|..|...|..|:.  |.|... |.|.
Mouse   178 DQD----LLASQGSDGAPTGPEGREREGAQESLLPQEEAGSTGMDTSSPSDL--PSFCRESQPFQ 236

  Fly   267 PAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYM----------GLSNLNGIFGAGAAAAAAAASAG 321
            .|....||  .|..........:...||.|.:          ...||:|  ..|......:..:.
Mouse   237 VAQPRGAG--QQEAPTQAGNAGSLEPLLDQLLDEVQVEEPAPAPLNLDG--DPGGRVHEGSQKSF 297

  Fly   322 YPQNLSLHAGLSAMSQVSPPCSNSSPRES-PKLVPHP 357
            :||.   .||.:.|...||..|||..||| |..|..|
Mouse   298 WPQE---EAGSTGMDTSSPSDSNSFCRESFPSQVAQP 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 25/55 (45%)
Duxf3XP_030101272.1 homeodomain 19..73 CDD:238039
HOX 112..162 CDD:197696 20/48 (42%)
Blue background indicates that the domain is not in the aligned region.

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