DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and SHOX2

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_003021.3 Gene:SHOX2 / 6474 HGNCID:10854 Length:355 Species:Homo sapiens


Alignment Length:208 Identity:78/208 - (37%)
Similarity:97/208 - (46%) Gaps:40/208 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 ELSSSLNNGHDLSDMERPR-KVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEAR 196
            ||.....:...:.|..:.: |.|||||.||..||::|||.|::|.|||.|.||:|:.||.|||||
Human   143 ELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEAR 207

  Fly   197 VQVWFQNRRAKWRKREKFMNQDKAGYLLPEQG-------LPEFPLGIPLPPHGLPGH----PGSM 250
            |||||||||||.||:|   ||...|.|:....       .|...:|....|.....|    |.|.
Human   208 VQVWFQNRRAKCRKQE---NQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSF 269

  Fly   251 Q--------SEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGLSNLNGIF 307
            |        |.....|..||.|.  ||.|...:.|    ||.:.||           |:.|....
Human   270 QVQAQLQLDSAVAHAHHHLHPHL--AAHAPYMMFP----APPFGLP-----------LATLAADS 317

  Fly   308 GAGAAAAAAAASA 320
            .:.|:..||||:|
Human   318 ASAASVVAAAAAA 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 39/55 (71%)
SHOX2NP_003021.3 Homeodomain 165..221 CDD:459649 39/55 (71%)
OAR 335..351 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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