DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Rhox3f

DIOPT Version :9

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001035178.3 Gene:Rhox3f / 621852 MGIID:3770277 Length:215 Species:Mus musculus


Alignment Length:105 Identity:32/105 - (30%)
Similarity:50/105 - (47%) Gaps:4/105 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 VQAKREDSPTNTDGGLDVDND--DELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQLERAFE 173
            |:..|......|.||...:.:  :::...:....|.::..|....||....||.:||.:|||.|.
Mouse   110 VEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFR 174

  Fly   174 KTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAK--WRKR 211
            ...:..:..|:.||..:.::||.|:.|||.||.|  |.||
Mouse   175 MNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKR 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeobox 156..209 CDD:278475 20/54 (37%)
Rhox3fNP_001035178.3 homeodomain 155..211 CDD:238039 22/55 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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