DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Alx4

DIOPT Version :9

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001100023.1 Gene:Alx4 / 296511 RGDID:1310201 Length:399 Species:Rattus norvegicus


Alignment Length:271 Identity:84/271 - (30%)
Similarity:107/271 - (39%) Gaps:102/271 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 DELSSSLNNGHDLSDMERPR-KVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEA 195
            |...:.:.:..:.:|.|..: |.||:|||||::||.:||:.|:||.||||:.||.||||.||:||
  Rat   180 DRAGAEIPSPLEKTDSESSKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEA 244

  Fly   196 RVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSMQSEFWPPHFA 260
            |||||||||||||||||:|                                 |.||.        
  Rat   245 RVQVWFQNRRAKWRKRERF---------------------------------GQMQQ-------- 268

  Fly   261 LHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGLSNLNGIFGAGAAAAAAAASAGYPQN 325
            :..||:.|                |:|| ..|....|..:.|.:.|...|||:...|...     
  Rat   269 VRTHFSTA----------------YELP-LLTRAENYAQIQNPSWIGNNGAASPVPACVV----- 311

  Fly   326 LSLHAGLSAMSQVSPPCSNSSPRESPKLVPHPTPPHATPPAGG----------NGGGGLL----T 376
                           ||..         ||....|||.||..|          :|.|..:    .
  Rat   312 ---------------PCDP---------VPACMSPHAHPPGSGASSVSDFLSVSGAGSHVGQTHM 352

  Fly   377 GGLISTAAQSP 387
            |.|...|..||
  Rat   353 GSLFGAAGISP 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeobox 156..209 CDD:278475 38/52 (73%)
Alx4NP_001100023.1 Homeobox 206..258 CDD:278475 38/51 (75%)
OAR 375..392 CDD:281777
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24329
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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