DRSC/TRiP Functional Genomics Resources

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Protein Alignment tws and CDC55

DIOPT Version :9

Sequence 1:NP_001287269.1 Gene:tws / 47877 FlyBaseID:FBgn0004889 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_011325.1 Gene:CDC55 / 852685 SGDID:S000003158 Length:526 Species:Saccharomyces cerevisiae


Alignment Length:520 Identity:247/520 - (47%)
Similarity:323/520 - (62%) Gaps:97/520 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 FSQIKG-ALDDDVTDADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANPRRGEYNVYSTF 130
            |||..| ..|..||:||:|:.|||::.|..|||||||||||:|:|      :|.|..||...:.|
Yeast    10 FSQCFGDKADIVVTEADLITAVEFDYTGNYLATGDKGGRVVLFER------SNSRHCEYKFLTEF 68

  Fly   131 QSHEPEFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNT------ 189
            |||:.|||||||||||||||:|:||:.....||||||||||:|||||.|::......|.      
Yeast    69 QSHDAEFDYLKSLEIEEKINEIKWLRPTQRSHFLLSTNDKTIKLWKVYEKNIKLVSQNNLTEGVT 133

  Fly   190 -----KEEN-----GLIRDPQNVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQET 244
                 |.:|     |.:|...::.:|::|.:.|...::.|:|:|.::|||||||||||:||||||
Yeast   134 FAKKGKPDNHNSRGGSVRAVLSLQSLKLPQLSQHDKIIAATPKRIYSNAHTYHINSISLNSDQET 198

  Fly   245 FLSADDLRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDM 309
            ||||||||||||:|::.:||:||||||||||||||||||:|||||.|||:|:||||||||:||||
Yeast   199 FLSADDLRINLWNLDIPDQSFNIVDIKPTNMEELTEVITSAEFHPQECNLFMYSSSKGTIKLCDM 263

  Fly   310 RSAALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIE 374
            |..:|||..:|.|||..:|.|.:||:||.|||||:|.|.:|||:.|||||::|:||::|:.||::
Yeast   264 RQNSLCDNKTKTFEEYLDPINHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIWDVNMDNKPLK 328

  Fly   375 TYPVHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVF----------------- 422
            |..:||.|:.:|...||||.||||||..::|..||:|||||||.|.::                 
Yeast   329 TINIHEQLKERLSDTYENDAIFDKFEVNFSGDSSSVMTGSYNNNFMIYPNVVTSGDNDNGIVKTF 393

  Fly   423 ------DRNSKKDV-----------------------------TLEASRDII------------- 439
                  :.||.|::                             :..:||..|             
Yeast   394 DEHNAPNSNSNKNIHNSIQNKDSSSSGNSHKRRSNGRNTGMVGSSNSSRSSIAGGEGANSEDSGT 458

  Fly   440 -KPKTVLKPRKVCTGGKR--------KKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIF 495
             ..:.||:..|.....||        .:::...|.:||.|.|||.:|||.||.||||||||||||
Yeast   459 EMNEIVLQADKTAFRNKRYGSLAQRSARNKDWGDDIDFKKNILHFSWHPRENSIAVAATNNLFIF 523

  Fly   496  495
            Yeast   524  523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twsNP_001287269.1 CDC55 65..495 CDD:227498 245/518 (47%)
WD40 82..423 CDD:295369 204/379 (54%)
WD40 repeat 84..132 CDD:293791 23/47 (49%)
WD40 repeat 150..227 CDD:293791 31/92 (34%)
WD40 repeat 233..272 CDD:293791 31/38 (82%)
WD40 repeat 283..323 CDD:293791 27/39 (69%)
WD40 repeat 341..377 CDD:293791 20/35 (57%)
WD40 repeat 398..439 CDD:293791 19/92 (21%)
CDC55NP_011325.1 CDC55 1..526 CDD:227498 247/520 (48%)
WD40 repeat 28..69 CDD:293791 22/46 (48%)
WD40 repeat 136..181 CDD:293791 10/44 (23%)
WD40 repeat 187..223 CDD:293791 28/35 (80%)
WD40 repeat 237..288 CDD:293791 32/50 (64%)
WD40 repeat 295..331 CDD:293791 20/35 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346460
Domainoid 1 1.000 318 1.000 Domainoid score I184
eggNOG 1 0.900 - - E1_COG5170
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H81915
Inparanoid 1 1.050 478 1.000 Inparanoid score I225
Isobase 1 0.950 - 0 Normalized mean entropy S276
OMA 1 1.010 - - QHG54269
OrthoFinder 1 1.000 - - FOG0000622
OrthoInspector 1 1.000 - - oto98929
orthoMCL 1 0.900 - - OOG6_100728
Panther 1 1.100 - - LDO PTHR11871
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2
SonicParanoid 1 1.000 - - X368
TreeFam 1 0.960 - -
1615.740

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