DRSC/TRiP Functional Genomics Resources

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Protein Alignment tws and Ppp2r2b

DIOPT Version :9

Sequence 1:NP_001287269.1 Gene:tws / 47877 FlyBaseID:FBgn0004889 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_038952986.1 Gene:Ppp2r2b / 60660 RGDID:631441 Length:473 Species:Rattus norvegicus


Alignment Length:447 Identity:336/447 - (75%)
Similarity:377/447 - (84%) Gaps:27/447 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 TDADIISCVEFNHDGELLATGDKGGRVVIFQRD---------PA------------------SKA 116
            |:|||||.|||||.||||||||||||||||||:         ||                  ||.
  Rat    25 TEADIISTVEFNHTGELLATGDKGGRVVIFQREQEVFTEAQTPAVVLGSVLQVLKFNLPSLQSKN 89

  Fly   117 ANPRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERD 181
            ...||||||||||||||||||||||||||||||||||||.|:|..:|||||||||||||||||||
  Rat    90 QVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERD 154

  Fly   182 KSFGGYNTKEENGLIRDPQNVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFL 246
            |...|||.|:|.|.:|||..:|.||||.::.:.|:|||:|||.|||||||||||||||||.||::
  Rat   155 KRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYM 219

  Fly   247 SADDLRINLWHLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDMRS 311
            ||||||||||:.|:.|||:|||||||.||||||||||||||||..||.||||||||||||||||:
  Rat   220 SADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRA 284

  Fly   312 AALCDRHSKQFEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETY 376
            :||||||:|.|||||:|:||||||||||||||||.|:||||:::||||:.|||||:||.:|:|||
  Rat   285 SALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETY 349

  Fly   377 PVHEYLRAKLCSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKP 441
            .||:|||:|||||||||||||||||.|||.||.|||||||||||:||||:|:||||||||:..||
  Rat   350 QVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKP 414

  Fly   442 KTVLKPRKVCTGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDK 498
            :.:|||||||.||||:|||||||.|||:||||||||||.||||||||||||:|||||
  Rat   415 RAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDK 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twsNP_001287269.1 CDC55 65..495 CDD:227498 331/442 (75%)
WD40 82..423 CDD:295369 271/367 (74%)
WD40 repeat 84..132 CDD:293791 40/74 (54%)
WD40 repeat 150..227 CDD:293791 50/76 (66%)
WD40 repeat 233..272 CDD:293791 30/38 (79%)
WD40 repeat 283..323 CDD:293791 32/39 (82%)
WD40 repeat 341..377 CDD:293791 24/35 (69%)
WD40 repeat 398..439 CDD:293791 33/40 (83%)
Ppp2r2bXP_038952986.1 CDC55 25..468 CDD:227498 331/442 (75%)
WD40 repeat 30..105 CDD:293791 40/74 (54%)
WD40 repeat 123..200 CDD:293791 50/76 (66%)
WD40 repeat 206..242 CDD:293791 27/35 (77%)
WD40 repeat 256..307 CDD:293791 41/50 (82%)
WD40 repeat 314..350 CDD:293791 24/35 (69%)
WD40 repeat 371..406 CDD:293791 28/34 (82%)
WD40 repeat 445..468 CDD:293791 20/22 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353661
Domainoid 1 1.000 738 1.000 Domainoid score I94
eggNOG 1 0.900 - - E1_COG5170
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 738 1.000 Inparanoid score I564
OMA 1 1.010 - - QHG54269
OrthoDB 1 1.010 - - D266049at33208
OrthoFinder 1 1.000 - - FOG0000622
OrthoInspector 1 1.000 - - otm44385
orthoMCL 1 0.900 - - OOG6_100728
Panther 1 1.100 - - O PTHR11871
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X368
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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