DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tws and ppp2r2a

DIOPT Version :9

Sequence 1:NP_001287269.1 Gene:tws / 47877 FlyBaseID:FBgn0004889 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001011075.1 Gene:ppp2r2a / 496486 XenbaseID:XB-GENE-971147 Length:444 Species:Xenopus tropicalis


Alignment Length:437 Identity:343/437 - (78%)
Similarity:389/437 - (89%) Gaps:3/437 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 EASWCFSQIKGALDDDVTDADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANPRRGEYNV 126
            :..|||||:|||::|||::|||||.|||||.|||||||||||||||||::..|..   .||||:|
 Frog     9 DIQWCFSQVKGAVEDDVSEADIISTVEFNHSGELLATGDKGGRVVIFQQESKSPY---HRGEYSV 70

  Fly   127 YSTFQSHEPEFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKE 191
            |||||||||||||||||||||||||||||.|||...|||||||||:||||:|||||...|||.||
 Frog    71 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKE 135

  Fly   192 ENGLIRDPQNVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLW 256
            |||..|||..||.||||..:.:.|:|||||||.|||||||||||||||||.||:|||||||:|||
 Frog   136 ENGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISVNSDYETYLSADDLRVNLW 200

  Fly   257 HLEVVNQSYNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDMRSAALCDRHSKQ 321
            |||:.::|:|||||||.||||||||||||||||..||.||||||||||||||||.:||||||||.
 Frog   201 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRESALCDRHSKL 265

  Fly   322 FEEPENPTNRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKL 386
            |||||:|:||||||||||||||||.|::||||::|||||:|:|||:||::|:|||.||||||:||
 Frog   266 FEEPEDPSNRSFFSEIISSISDVKFSHNGRYMMTRDYLSVKIWDLNMESRPVETYQVHEYLRSKL 330

  Fly   387 CSLYENDCIFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVC 451
            |||||||||||||||||||.|:.:||||||||||:||||:|:|:||||||:..||:|||||||||
 Frog   331 CSLYENDCIFDKFECCWNGPDNIVMTGSYNNFFRMFDRNTKRDITLEASRENSKPRTVLKPRKVC 395

  Fly   452 TGGKRKKDEISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDK 498
            ..||||||||:||.||||||||||||||:|||||||.||||:||||:
 Frog   396 ASGKRKKDEITVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDR 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twsNP_001287269.1 CDC55 65..495 CDD:227498 339/429 (79%)
WD40 82..423 CDD:295369 269/340 (79%)
WD40 repeat 84..132 CDD:293791 34/47 (72%)
WD40 repeat 150..227 CDD:293791 53/76 (70%)
WD40 repeat 233..272 CDD:293791 30/38 (79%)
WD40 repeat 283..323 CDD:293791 33/39 (85%)
WD40 repeat 341..377 CDD:293791 24/35 (69%)
WD40 repeat 398..439 CDD:293791 31/40 (78%)
ppp2r2aNP_001011075.1 CDC55 7..439 CDD:227498 339/432 (78%)
WD40 repeat 31..76 CDD:293791 34/47 (72%)
WD40 repeat 94..171 CDD:293791 53/76 (70%)
WD40 repeat 177..213 CDD:293791 27/35 (77%)
WD40 repeat 227..278 CDD:293791 42/50 (84%)
WD40 repeat 285..321 CDD:293791 24/35 (69%)
WD40 repeat 342..377 CDD:293791 26/34 (76%)
WD40 repeat 416..439 CDD:293791 19/22 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 738 1.000 Domainoid score I107
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 738 1.000 Inparanoid score I599
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D266049at33208
OrthoFinder 1 1.000 - - FOG0000622
OrthoInspector 1 1.000 - - otm47431
Panther 1 1.100 - - O PTHR11871
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2
SonicParanoid 1 1.000 - - X368
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.190

Return to query results.
Submit another query.