DRSC/TRiP Functional Genomics Resources

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Protein Alignment tws and ppp2r2c

DIOPT Version :9

Sequence 1:NP_001287269.1 Gene:tws / 47877 FlyBaseID:FBgn0004889 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_002938313.1 Gene:ppp2r2c / 100490097 XenbaseID:XB-GENE-6076030 Length:457 Species:Xenopus tropicalis


Alignment Length:429 Identity:319/429 - (74%)
Similarity:377/429 - (87%) Gaps:1/429 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 KGALDDDVT-DADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANPRRGEYNVYSTFQSHE 134
            :|.||...| :|||||.|||||.|:||||||||||||||||:|.:|.....:|||||||||||||
 Frog    23 EGCLDIITTSNADIISTVEFNHTGDLLATGDKGGRVVIFQREPETKNEPYSQGEYNVYSTFQSHE 87

  Fly   135 PEFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDP 199
            ||||||||||||||||||:||.|:|..|.||||||||:||||:|||||...|||.|:|.|.::|.
 Frog    88 PEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKISERDKRPEGYNLKDEEGRLKDL 152

  Fly   200 QNVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLWHLEVVNQS 264
            ..||:|:||.:|.:.|:||.||||.|:|.||||:||||||||.||::||||||||||||.:.::|
 Frog   153 CTVTSLQVPVLKPMDLMVEVSPRRIFSNGHTYHVNSISVNSDCETYMSADDLRINLWHLAITDRS 217

  Fly   265 YNIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDMRSAALCDRHSKQFEEPENPT 329
            :|||||||.|||:||||||||||||..||:||||||||::||||||::||||:|.|.:||||:|:
 Frog   218 FNIVDIKPANMEDLTEVITAAEFHPHHCNLFVYSSSKGSLRLCDMRASALCDKHCKLYEEPEDPS 282

  Fly   330 NRSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDC 394
            |||||||||||:||||.|:|||||::||||::|||||:|||||:|||.||:|||:||||||||||
 Frog   283 NRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMETKPLETYQVHDYLRSKLCSLYENDC 347

  Fly   395 IFDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKRKKD 459
            |||||||.|||.||.||||:||||||:||||:|:||||||||:..||:.:||||:||.||||:||
 Frog   348 IFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAILKPRRVCVGGKRRKD 412

  Fly   460 EISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDK 498
            :||||.|||.||||||||||.|||||:||||||:|||||
 Frog   413 DISVDSLDFTKKILHTAWHPTENIIAIAATNNLYIFQDK 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twsNP_001287269.1 CDC55 65..495 CDD:227498 314/424 (74%)
WD40 82..423 CDD:295369 254/340 (75%)
WD40 repeat 84..132 CDD:293791 35/47 (74%)
WD40 repeat 150..227 CDD:293791 46/76 (61%)
WD40 repeat 233..272 CDD:293791 28/38 (74%)
WD40 repeat 283..323 CDD:293791 29/39 (74%)
WD40 repeat 341..377 CDD:293791 26/35 (74%)
WD40 repeat 398..439 CDD:293791 32/40 (80%)
ppp2r2cXP_002938313.1 CDC55 26..448 CDD:227498 313/421 (74%)
WD40 repeat 37..85 CDD:293791 35/47 (74%)
WD40 repeat 103..181 CDD:293791 46/77 (60%)
WD40 repeat 186..222 CDD:293791 25/35 (71%)
WD40 repeat 236..287 CDD:293791 37/50 (74%)
WD40 repeat 294..330 CDD:293791 26/35 (74%)
WD40 repeat 351..386 CDD:293791 27/34 (79%)
WD40 repeat 425..448 CDD:293791 19/22 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 738 1.000 Domainoid score I107
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 738 1.000 Inparanoid score I599
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D266049at33208
OrthoFinder 1 1.000 - - FOG0000622
OrthoInspector 1 1.000 - - otm47431
Panther 1 1.100 - - O PTHR11871
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X368
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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