DRSC/TRiP Functional Genomics Resources

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Protein Alignment tws and ppp2r2ca

DIOPT Version :9

Sequence 1:NP_001287269.1 Gene:tws / 47877 FlyBaseID:FBgn0004889 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001032471.1 Gene:ppp2r2ca / 100002802 ZFINID:ZDB-GENE-051120-168 Length:452 Species:Danio rerio


Alignment Length:428 Identity:307/428 - (71%)
Similarity:362/428 - (84%) Gaps:3/428 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 LDDDVTDADIISCVEFNHDGELLATGDKGGRVVIFQRDPASKAANP---RRGEYNVYSTFQSHEP 135
            |.|.||:||:||.||||..|:||||||||||||||||:..||..:.   ..||||||||||||||
Zfish    15 LRDYVTEADVISTVEFNQTGDLLATGDKGGRVVIFQRETESKGESEELGESGEYNVYSTFQSHEP 79

  Fly   136 EFDYLKSLEIEEKINKIRWLQQKNPVHFLLSTNDKTVKLWKVSERDKSFGGYNTKEENGLIRDPQ 200
            :|||||||||||||||||||.|::..||||||||||:||||||||||...|||.|:|.|.|:|..
Zfish    80 DFDYLKSLEIEEKINKIRWLPQQDAAHFLLSTNDKTIKLWKVSERDKRPEGYNLKDEEGRIKDIS 144

  Fly   201 NVTALRVPSVKQIPLLVEASPRRTFANAHTYHINSISVNSDQETFLSADDLRINLWHLEVVNQSY 265
            .||:||||.:|...|:||..|||.|||.||||:||||||||.||:|||||||||:|||::.::|:
Zfish   145 TVTSLRVPVLKPTDLMVEVRPRRVFANGHTYHVNSISVNSDGETYLSADDLRINMWHLDITDRSF 209

  Fly   266 NIVDIKPTNMEELTEVITAAEFHPTECNVFVYSSSKGTIRLCDMRSAALCDRHSKQFEEPENPTN 330
            |||||||.|||:||||||||||||..|::|||||||||:||||||.:||||||||.|||||:|.|
Zfish   210 NIVDIKPANMEDLTEVITAAEFHPQHCHLFVYSSSKGTLRLCDMRESALCDRHSKIFEEPEDPGN 274

  Fly   331 RSFFSEIISSISDVKLSNSGRYMISRDYLSIKVWDLHMETKPIETYPVHEYLRAKLCSLYENDCI 395
            ||||||||||:||||.|:||||:::||||::||||||||..|:|||.||||||::||||||||||
Zfish   275 RSFFSEIISSVSDVKFSHSGRYLLTRDYLTVKVWDLHMEKGPVETYQVHEYLRSRLCSLYENDCI 339

  Fly   396 FDKFECCWNGKDSSIMTGSYNNFFRVFDRNSKKDVTLEASRDIIKPKTVLKPRKVCTGGKRKKDE 460
            ||||||.||..||.||||:||:|||:|||.:.:.|||||.|:..||:.||:.|:|.|||:|::.:
Zfish   340 FDKFECVWNSTDSVIMTGAYNSFFRMFDRETGRGVTLEAWRESSKPRAVLRTRRVYTGGRRRRGD 404

  Fly   461 ISVDCLDFNKKILHTAWHPEENIIAVAATNNLFIFQDK 498
            :.||.|||.|||||.||||.|||||:||||||:||||:
Zfish   405 VGVDSLDFTKKILHMAWHPAENIIAIAATNNLYIFQDR 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twsNP_001287269.1 CDC55 65..495 CDD:227498 303/423 (72%)
WD40 82..423 CDD:295369 254/343 (74%)
WD40 repeat 84..132 CDD:293791 34/50 (68%)
WD40 repeat 150..227 CDD:293791 49/76 (64%)
WD40 repeat 233..272 CDD:293791 28/38 (74%)
WD40 repeat 283..323 CDD:293791 31/39 (79%)
WD40 repeat 341..377 CDD:293791 24/35 (69%)
WD40 repeat 398..439 CDD:293791 26/40 (65%)
ppp2r2caNP_001032471.1 CDC55 19..439 CDD:227498 301/419 (72%)
WD40 23..367 CDD:295369 254/343 (74%)
WD40 repeat 25..76 CDD:293791 34/50 (68%)
WD40 repeat 94..172 CDD:293791 50/77 (65%)
WD40 repeat 177..213 CDD:293791 25/35 (71%)
WD40 repeat 227..278 CDD:293791 40/50 (80%)
WD40 repeat 285..321 CDD:293791 24/35 (69%)
WD40 repeat 342..393 CDD:293791 30/50 (60%)
WD40 repeat 416..439 CDD:293791 18/22 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595811
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54269
OrthoDB 1 1.010 - - D266049at33208
OrthoFinder 1 1.000 - - FOG0000622
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100728
Panther 1 1.100 - - O PTHR11871
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X368
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.820

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