DRSC/TRiP Functional Genomics Resources

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Protein Alignment bgcn and PRP43

DIOPT Version :9

Sequence 1:NP_523832.2 Gene:bgcn / 47873 FlyBaseID:FBgn0004581 Length:1215 Species:Drosophila melanogaster
Sequence 2:NP_011395.1 Gene:PRP43 / 852757 SGDID:S000003088 Length:767 Species:Saccharomyces cerevisiae


Alignment Length:971 Identity:196/971 - (20%)
Similarity:334/971 - (34%) Gaps:315/971 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RRCCQQFPCTFRTSEHEAFANNARSLG----LRSQ--VVHVNGNSCVKVYKQACRHYLEEPKTLV 79
            ||...:.|....||..|..|..|..|.    |.|:  :||.:...    :|...||:....:...
Yeast     5 RRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGE----FKGLQRHHTSAEEAQK 65

  Fly    80 LSSGATLNMFTLLSRKSLMGKEDLELYADLVSMKANASDLPSLHLPLPAIRPPNLRFWTEAQLNF 144
            |..| .:|.||        |:|....|.|::.::.        .||:.|.|...|:.:   |.|.
Yeast    66 LEDG-KINPFT--------GREFTPKYVDILKIRR--------ELPVHAQRDEFLKLY---QNNQ 110

  Fly   145 LTAFLGHSLSDEILQSLYASRVIVYNAALCWDKSVFLPLVILDDCRNKKSNVKIMCIERQAILAT 209
            :..|:|.:.|.:..|                     :|..:|.|......|.::.|.:.:.:.|.
Yeast   111 IMVFVGETGSGKTTQ---------------------IPQFVLFDEMPHLENTQVACTQPRRVAAM 154

  Fly   210 YNSQRTANFFGEQLGETVGIQLPYFSAVSSSTFIIYSTAQYFLR-SLTSQQFRNISHLVVNDVHL 273
            ..:||.|.....:|||.||..:.:.:..|:.|.:.|.|....|| ::........|.:::::.|.
Yeast   155 SVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219

  Fly   274 HDPYTDILLSEIRMALSSHQNLRVVLLSQMGNPKKFTDFFGEGLQLNMIKQPEVAPRVSYLNELH 338
            ....||||:..::..:....:|:::::|...:.:||..:|.:...|       ..|..:|..||:
Yeast   220 RTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL-------AVPGRTYPVELY 277

  Fly   339 SCIALAGIHKGPDIYKEIPEAFRANNPRNEQMDKCLQAYGELGTDAALRPFLYAVNYDLAPVNYR 403
            ..         |:..::.                         .|:|:|..|             
Yeast   278 YT---------PEFQRDY-------------------------LDSAIRTVL------------- 295

  Fly   404 HSLTGKTAVHFASELNKANHLRLLLFMGADPYIVDLFQQNAISLAAMNGN----HECIDVLNSYS 464
                   .:|...|...     :|||:..:..|.|     |:...::.|:    .|....|:.|.
Yeast   296 -------QIHATEEAGD-----ILLFLTGEDEIED-----AVRKISLEGDQLVREEGCGPLSVYP 343

  Fly   465 LHGYVVKSAKPDFVDYDLIIDIMYLLRTKPEYSPGEYSPGNILIILPTYYHIVKLNYMILSHCLT 529
            |:|    |..|.        ....:....||...|.  ||.                        
Yeast   344 LYG----SLPPH--------QQQRIFEPAPESHNGR--PGR------------------------ 370

  Fly   530 GSLQECSIFLLYDNMRNDYLQALVNASDETVKVVLATDIIESLCLKVPFKYQIDTACRLNNVYDT 594
                                           |||::|:|.|:........|.:|.......||:.
Yeast   371 -------------------------------KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNP 404

  Fly   595 TSCSGDDRFEWVAKDALLRRE-LILQP-NKGDVQ-------------CFRLISKEAYE-ELSETS 643
            .                :|.| |::.| :|...|             ||||.::||:: ||.|.|
Yeast   405 R----------------IRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQS 453

  Fly   644 QPSLQTMQLDKICLAVKLLSPNTIIS-EYLGITISPPPLINVHHAVQFLKKIDVLDDAEDVTWLG 707
            .|.:....|....|.:|.|..:.::. :::    .||....:..|::.|..:..|||..::|.||
Yeast   454 YPEILRSNLSSTVLELKKLGIDDLVHFDFM----DPPAPETMMRALEELNYLACLDDEGNLTPLG 514

  Fly   708 CRLMDIPVSCQLGRMLIFGILLRCLDPILTIVSSLSTADPLGIPFTEDIDNLWDRFTIYIQNSIK 772
            ......|:...|..|||.....:|...|||||:.||      :|            .::|:.:..
Yeast   515 RLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLS------VP------------NVFIRPTKD 561

  Fly   773 KERTYLSDNQFS----DHFIFVRLY------KEWQNRMHNRTPPLYLKDEYEFMLNGLMEQLTSI 827
            |:|...:.|.|:    ||...:.:|      :.::..:|.     :.:|.|   ||         
Yeast   562 KKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHK-----WCRDHY---LN--------- 609

  Fly   828 RSEIVSSLRAANLIHSRGKLSMNNLNQMSCN---------WHMVKAALTGGMYPNIYAVDTRKSS 883
                ..||.||:.|.|:.:..||..| :..|         :..::.||..|.:   ..|..::|.
Yeast   610 ----YRSLSAADNIRSQLERLMNRYN-LELNTTDYESPKYFDNIRKALASGFF---MQVAKKRSG 666

  Fly   884 LKSAF----SGNVSMHPNTVLRDFLEPLNISAQSFRTPWIVCNR----QKSHIVYATLVVP 936
            .|...    :.:|.:||:|||....|            |::.|.    .|::|...|.|.|
Yeast   667 AKGYITVKDNQDVLIHPSTVLGHDAE------------WVIYNEFVLTSKNYIRTVTSVRP 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bgcnNP_523832.2 ANK repeat 406..438 CDD:293786 6/31 (19%)
ANK 407..>460 CDD:238125 10/56 (18%)
Ank_2 413..>460 CDD:289560 10/50 (20%)
HrpA <484..973 CDD:224557 103/497 (21%)
HA2 694..763 CDD:214852 20/68 (29%)
OB_NTP_bind 823..945 CDD:285018 30/131 (23%)
PRP43NP_011395.1 HrpA 55..753 CDD:224557 182/917 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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