DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bgcn and Dhx34

DIOPT Version :9

Sequence 1:NP_523832.2 Gene:bgcn / 47873 FlyBaseID:FBgn0004581 Length:1215 Species:Drosophila melanogaster
Sequence 2:NP_001258381.1 Gene:Dhx34 / 684903 RGDID:1584452 Length:1143 Species:Rattus norvegicus


Alignment Length:950 Identity:180/950 - (18%)
Similarity:310/950 - (32%) Gaps:325/950 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PCTFRTSEHEAFANNARSLGLRSQVVHVNGNSC----VKVYKQACRHYLEEPKTLVLSSGATLNM 88
            |||:    ...:..|...||..::..|..|...    |..:::|..|||:               
  Rat    98 PCTY----DPRYRINLSILGPDTRGRHGPGKGLPPERVSEFRRALLHYLD--------------- 143

  Fly    89 FTLLSRKSLMGKEDLELYADLVSMKANASDLPSLHLPLPAIRPPNLRFWTEAQLNFLTAFLGHSL 153
               ..:|...|:        |..::...:.||.                  ||           .
  Rat   144 ---FQQKQAFGR--------LAKLQRERAALPI------------------AQ-----------Y 168

  Fly   154 SDEILQSLYASRVIVYNAALCWDKSVFLPLVILDDCRNKKSNVKIMCIERQAILATYNSQRTANF 218
            .:.|||:|...:|:|........||..:|..:|     ......:.|.:.:.|.....::|....
  Rat   169 GNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLL-----AAGFSHVACTQPRRIACISLAKRVGFE 228

  Fly   219 FGEQLGETVGIQLPYFSAVSSSTFIIYSTAQYFLRSLTSQ-QFRNISHLVVNDVHLHDPYTDILL 282
            ...|.|..||.|:.:.|..|::|.|::.|....||.:..: :......|:|::||....:.|.||
  Rat   229 SLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQCEPRLPQYQVLIVDEVHERHLHNDFLL 293

  Fly   283 SEIRMALSSHQNLRVVLLSQMGNPKKFTDFF---------GEGLQLNMIKQPEVAPRVSYLNELH 338
            ..::..|....:|:|:|:|...|...|:.:|         |....:.::.||:.|.:.:..:|  
  Rat   294 GVLQRLLPQRPDLKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVVYQPQEAEQSASKSE-- 356

  Fly   339 SCIALAGIHKGPDIYKEIPEAFRANNPRNEQMDKC--LQAYGELGT--DAALRPFLYAVNYDLAP 399
                    ...|..:..:.||.....|..|:.|..  |....|:.|  |||.   .||       
  Rat   357 --------KLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGMAEISTVLDAAQ---AYA------- 403

  Fly   400 VNYRHSLTGKTAVHFASELNKANHLRLLLFMGADPYIVDLFQQNAISLAAMNGNHECIDVLNSYS 464
                 :||.:..|                          |...:|:|:|                
  Rat   404 -----TLTQRWVV--------------------------LPLHSALSVA---------------- 421

  Fly   465 LHGYVVKSAKPDFVDYDLIIDIMYLLRTKPEYSPGEYSPGNILIILPTYYHIVKLNYMILSHCLT 529
                          |.|.:.|:               :|..:.                      
  Rat   422 --------------DQDKVFDV---------------APAGVR---------------------- 435

  Fly   530 GSLQECSIFLLYDNMRNDYLQALVNASDETVKVVLATDIIESLCLKVPFKYQIDTACRLNNVYDT 594
                                           |.:|:|:|.|:.......::.:|:.......||.
  Rat   436 -------------------------------KCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDP 469

  Fly   595 TSCSGDDRFEWVAKDALLRRELILQPNKGDV------QCFRLISKEAYEELSETSQPSLQTMQLD 653
            .:.....:..|:::.:..:|       ||..      .|:||.::..|:..:....|.::.:.||
  Rat   470 QAKLQRLQEFWISQASAEQR-------KGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALD 527

  Fly   654 KICLAVKLLS---PNTIISEYLGITISPPPLINVHHAVQFLKKIDVLDDAEDVTWLGCRLMDIPV 715
            .:.|.:|.:|   |.|.      ..|.|||..:|..|:.:|:....||.:|.:|.:|..|..:||
  Rat   528 ALVLQMKSMSVGDPRTF------PFIEPPPAASVETAILYLQDQGALDSSEALTPIGSLLAQLPV 586

  Fly   716 SCQLGRMLIFGILLRCLDPILTIVSSLSTADPL---------------------GIPFTEDIDNL 759
            ...:|:|:|.|.:....:|:|||.::||...|.                     |.|||     |
  Rat   587 DVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQGDPFT-----L 646

  Fly   760 WDRFTIYIQNSIKKERTYLSDNQFSDHFIFVRLYKEWQNRMHNRTPPLY----LKDEYEFML--N 818
            ::.|..::|  :|.||   |.|.           ::|..|.......||    |:.:::.:|  :
  Rat   647 FNVFNAWVQ--VKSER---SGNS-----------RKWCRRRGVEEHRLYEMANLRRQFKELLEDH 695

  Fly   819 GLMEQLTSIRSEIVSSLRAANLIHSRGKLSMNNLNQMSCNWHMVKAALT--GGMYPNIYAVDTRK 881
            ||              ||.|.::..|...|.....:.....|.:|....  ||....:..:....
  Rat   696 GL--------------LRGAQVVAPRDSYSRLQQRRERQTLHQLKRQHEEGGGRRRKVLRLQEDG 746

  Fly   882 SSLKSAFSGNVSMHPNTV--------LRDFLEPLNISAQS 913
            .|......|:.|...::|        ||..||.|..:|.|
  Rat   747 CSSDEDHEGSASQRADSVDIQDVKFKLRHNLEQLQAAASS 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bgcnNP_523832.2 ANK repeat 406..438 CDD:293786 3/31 (10%)
ANK 407..>460 CDD:238125 6/52 (12%)
Ank_2 413..>460 CDD:289560 4/46 (9%)
HrpA <484..973 CDD:224557 91/475 (19%)
HA2 694..763 CDD:214852 24/89 (27%)
OB_NTP_bind 823..945 CDD:285018 19/100 (19%)
Dhx34NP_001258381.1 HrpA 155..>687 CDD:224557 141/748 (19%)
OB_NTP_bind 798..909 CDD:400182
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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