DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bgcn and Dhx35

DIOPT Version :9

Sequence 1:NP_523832.2 Gene:bgcn / 47873 FlyBaseID:FBgn0004581 Length:1215 Species:Drosophila melanogaster
Sequence 2:XP_006235485.1 Gene:Dhx35 / 362260 RGDID:1311165 Length:703 Species:Rattus norvegicus


Alignment Length:737 Identity:136/737 - (18%)
Similarity:267/737 - (36%) Gaps:205/737 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 LHDPYTDILLSEIR-----MALSSH-----QNLR-VVLLSQMGNPKKF--------TDFFGEGLQ 318
            :::||..:.:.:.|     ..|.:|     :|.: ||::.:.|..|..        ..:..||..
  Rat    38 IYNPYAALSIEQQRQKLPVFKLRNHILYLVENYQTVVIVGETGCGKSTQVPQYLAEAGWTAEGRV 102

  Fly   319 LNMIKQPEVAPRVSYLNELHSCIALAG---IHKGPDIYKEIPEAFRANNPRNEQMDKCLQAY--- 377
            :.:.:...||           .:.:||   ..:|..:..|:....|        .|.|....   
  Rat   103 VGVTQPRRVA-----------AVTVAGRVADERGAVLGHEVGYCIR--------FDDCTDPLATR 148

  Fly   378 ------GELGTDAALRPFLYAVNYDLAPVNYRHSLTGKT--AVHFASEL-NKANHLRLLL---FM 430
                  |.|..:..:.|.|  ..|.:..::..|..|..|  |:....:: .|...|||::   .:
  Rat   149 IKFLTDGMLVREMMVDPLL--TKYSVVMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATL 211

  Fly   431 GADPYIVDLFQQNAIS--------LAAMNGNHECIDVLNSYSLHGYVVKSAKPDFV--DYDLIID 485
            .|:.: .|.|.||..|        :..:.|....:|:        :.::|..||::  ..|.::.
  Rat   212 DAEKF-RDFFNQNETSDPARDTCVILTVEGRTFPVDI--------FYLQSPVPDYIKATVDTVVK 267

  Fly   486 IMYLLRTKPEYSPGEYSPGNILIILPTYYHIVKLNYMILSH----CLTGSLQECSIFLLYDNMRN 546
            |        ..:.|:   |:||..|.....:..:..|::..    ..||..:...:..:|..:.:
  Rat   268 I--------HQTEGD---GDILAFLTGQEEVETVVSMLIEQARALARTGMKKHLRVLPMYAGLPS 321

  Fly   547 -DYLQALVNASDETVKVVLATDIIESLCLKVPFKYQID------------TACRLNNVYDTTSCS 598
             :.::.....|....||::||::.|:........|.||            ||.....|...:..|
  Rat   322 FEQMKVFERVSHSVRKVIVATNVAETSITISGIVYVIDCGFMKLRAYNPRTAIECLVVVPVSQAS 386

  Fly   599 GDDRFEWVAKDALLRRELILQPNKG----DVQCFRLISKEAYEELSETSQPSLQTMQLDKICLAV 659
            .:.|                 ..:|    ..:|:||.::||:|:|.:::.|.:|...|..:.|.:
  Rat   387 ANQR-----------------AGRGGRNRSGKCYRLYTEEAFEQLPQSTVPEMQRSNLAPVVLQL 434

  Fly   660 KLLSPNTIISEYLGITISPPPLINVHHAVQFLKKIDVLD-DAEDVTWLGCRLMDIPVSCQLGRML 723
            |.|..::::..:.   :||||..::..|::.|..:..|| |......||.|:.:.|::....:||
  Rat   435 KALGIDSVLRFHF---MSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKML 496

  Fly   724 I----FGILLRCLDPILTIVSSLSTADPLGIPFTEDIDNLWDRFTIYIQNSIKKERTYLSDNQFS 784
            :    ||    |...||:|.:.:            .|.|      :::..|.:|.:......:|:
  Rat   497 LESGNFG----CSQEILSIAAMM------------QIQN------VFVFPSNQKSQATRVHRKFA 539

  Fly   785 ----DHFIFVRLYKEWQNRMHNRTPPLYLKDEYEFMLN--GLMEQLTSIRSEIVSSLRAANLIHS 843
                ||...:.:|:.:..  ||::....    .|..||  ||              :|||.:   
  Rat   540 VEEGDHLTMLNVYEAFIK--HNKSSQWC----QEHFLNYKGL--------------VRAATV--- 581

  Fly   844 RGKLSMNNLNQMSCNWHMVKAALTGGMYPNIYAVDTRKSSLKSAFSGNVSMHPNT----VLRD-- 902
                 .:.|.::...:.:.|.:..|...|.:..:       .|.|..|.:...:|    .:||  
  Rat   582 -----RDQLKKLLVKFQVPKMSSEGDPDPVLRCI-------VSGFFANAARFHSTGAYRTIRDDH 634

  Fly   903 --FLEPLNISAQSFRTPWIVCN 922
              .:.|.::........|::.|
  Rat   635 ELHIHPASVLYAEKPPRWVIYN 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bgcnNP_523832.2 ANK repeat 406..438 CDD:293786 8/37 (22%)
ANK 407..>460 CDD:238125 15/66 (23%)
Ank_2 413..>460 CDD:289560 12/58 (21%)
HrpA <484..973 CDD:224557 90/479 (19%)
HA2 694..763 CDD:214852 17/73 (23%)
OB_NTP_bind 823..945 CDD:285018 16/108 (15%)
Dhx35XP_006235485.1 DEXDc 53..224 CDD:214692 35/192 (18%)
DEXDc 73..211 CDD:238005 28/158 (18%)
HELICc 301..396 CDD:197757 18/111 (16%)
HA2 465..549 CDD:214852 22/105 (21%)
OB_NTP_bind 584..683 CDD:285018 13/80 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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