DRSC/TRiP Functional Genomics Resources

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Protein Alignment bgcn and Dhx38

DIOPT Version :9

Sequence 1:NP_523832.2 Gene:bgcn / 47873 FlyBaseID:FBgn0004581 Length:1215 Species:Drosophila melanogaster
Sequence 2:XP_006255639.1 Gene:Dhx38 / 292007 RGDID:1310345 Length:1227 Species:Rattus norvegicus


Alignment Length:836 Identity:158/836 - (18%)
Similarity:279/836 - (33%) Gaps:276/836 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 GKEDL---ELYADLVSMKANASD----LPSL-----HLPLPAIRPPNLRFWTEAQLNFLTAFLGH 151
            ||.|.   :.:||.:..|:.||.    ..|:     :||:.|::...|....:..:..:....|.
  Rat   495 GKVDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGS 559

  Fly   152 SLSDEILQSLYASRVIVYNAALCWDKSVFLPLVILDDCRNKKSNVKIMCIERQAILATYNSQRTA 216
            ..:.::.|.|:......|.                          .|.|.:.:.:.|...::|.:
  Rat   560 GKTTQLTQYLHQDGYTDYG--------------------------MIGCTQPRRVAAMSVAKRVS 598

  Fly   217 NFFGEQLGETVGIQLPYFSAVSSSTFIIYSTAQYFLR-SLTSQQFRNISHLVVNDVHLHDPYTDI 280
            ...|..|||.||..:.:....|.:|.|.|.|....|| ||......:.|.:::::.|.....||:
  Rat   599 EEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDV 663

  Fly   281 LLSEIRMALSSHQNLRVVLLSQMGNPKKFTDFFGEGLQLNMIKQPEVAPRVSYLNELHSCIALAG 345
            |...:|..::...:|::::.|...:..||..|||.                              
  Rat   664 LFGLLREVVARRSDLKLIVTSATMDADKFAAFFGN------------------------------ 698

  Fly   346 IHKGPDIYKEIPEAFRANNPRNEQMDKCLQAYGELGTDAALRPFLYAVNYDLAPVNYRHSLTGKT 410
                                                                .|:.:   :.|:|
  Rat   699 ----------------------------------------------------VPIFH---IPGRT 708

  Fly   411 AVHFASELNKANHLRLLLFMGADPYIVDLFQQNAISLAAMNGNHECIDVLNSYSLHGYVVKSAKP 475
            ..                                            :|:|.|        |:.:.
  Rat   709 FP--------------------------------------------VDILFS--------KTPQE 721

  Fly   476 DFVDYDLIIDIMYLLRTKPEYSPGEYSPGNILIILPTYYHIVKLNYMILSHCLTGSLQE------ 534
            |:|:..:...:...|         ..:||:|||.:|....|...:..|:.|     |:|      
  Rat   722 DYVEAAVKQSLQVHL---------SGAPGDILIFMPGQEDIEVTSDQIVEH-----LEELENAPA 772

  Fly   535 CSIFLLYDNMRNDYLQALV--NASDETVKVVLATDIIESLCLKVPFKYQIDTA-CRLN------- 589
            .::..:|..:.:| |||.:  .|.|...|.::||:|.|:........:.||:. |:|.       
  Rat   773 LAVLPIYSQLPSD-LQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIG 836

  Fly   590 ----NVYDTTSCSGDDRFEWVAKDALLRRELILQPNKGDVQCFRLISKEAYE-ELSETSQPSLQT 649
                .:|..:..:.:.|.....:             .|..|||||.::.||: ||..|:.|.:|.
  Rat   837 MDALQIYPISQANANQRSGRAGR-------------TGPGQCFRLYTQSAYKNELLTTTVPEIQR 888

  Fly   650 MQLDKICLAVKLLSPNTIISEYLGITISPPPLINVHHAVQFLKKIDVLDDAEDVTWLGCRLMDIP 714
            ..|..:.|.:|.|....::..:.   :.|||..|:.:::..|..:..||:...:|..|..:::.|
  Rat   889 TNLANVVLLLKSLGVQDLLQFHF---MDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFP 950

  Fly   715 VSCQLGRMLIFGILLRCLDPILTIVSSLSTA----DPLGIPFTEDIDNLWDRFTIYIQNSIKKER 775
            :...|.:|||....:.|...||.|||.||..    .|.|  ..|:.|.:.::|.:          
  Rat   951 LDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKG--REEESDQIREKFAV---------- 1003

  Fly   776 TYLSDNQFSDHFIFVRLYKEWQNRMHNRTPPLYLKD------------EYEFMLNGLM-EQLTSI 827
                  ..|||..::.:|.:|:|   |....::..|            |....|..:| :|..|:
  Rat  1004 ------PESDHLTYLNVYLQWKN---NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSL 1059

  Fly   828 RS-----EIVSSLRAANLIHSRGKLS-----MNNLNQMSCNWHMVKAALTGGMYPN 873
            .|     :||.....|...|...||.     :|....|.|:.|...:....|..|:
  Rat  1060 ASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPD 1115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bgcnNP_523832.2 ANK repeat 406..438 CDD:293786 2/31 (6%)
ANK 407..>460 CDD:238125 3/52 (6%)
Ank_2 413..>460 CDD:289560 1/46 (2%)
HrpA <484..973 CDD:224557 100/438 (23%)
HA2 694..763 CDD:214852 21/72 (29%)
OB_NTP_bind 823..945 CDD:285018 15/61 (25%)
Dhx38XP_006255639.1 DUF3984 <190..>299 CDD:289881
DEXDc 526..713 CDD:214692 43/341 (13%)
DEXDc 551..687 CDD:238005 31/161 (19%)
HELICc 758..861 CDD:197757 22/121 (18%)
HA2 930..1012 CDD:214852 25/99 (25%)
OB_NTP_bind <1063..1146 CDD:285018 12/53 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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