DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vir and Virma

DIOPT Version :9

Sequence 1:NP_524900.1 Gene:vir / 47869 FlyBaseID:FBgn0003977 Length:1854 Species:Drosophila melanogaster
Sequence 2:NP_001101385.1 Gene:Virma / 313061 RGDID:1559904 Length:1862 Species:Rattus norvegicus


Alignment Length:2122 Identity:516/2122 - (24%)
Similarity:836/2122 - (39%) Gaps:565/2122 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VDDGSELLFFDTFSHEEV-TDINLDLVQFPKPVFITQVRIIPLGARVQADFPGGVRLGATNPSKF 67
            ||...||||.|||.|... ...::|:|:||..|:|.:||:||.|.|..:..|.....|.|:|..|
  Rat     3 VDSSMELLFLDTFKHPSAEQSSHIDVVRFPCVVYINEVRVIPPGVRAHSGLPDNRAYGETSPHTF 67

  Fly    68 DLEFFVNDLGMPAASAFENLGLLRYNQNDCIHLDCSQEKIVTDGLVLRGWYSTITLAIYGIFTNS 132
            .|:.|.|::..|:|..|:.||.|.|::|..| :.....|:.||||||||||:.:||||||.....
  Rat    68 QLDLFFNNVSKPSAPVFDRLGSLEYDENTSI-IFRPNSKVNTDGLVLRGWYNCLTLAIYGSVDRV 131

  Fly   133 VTEPIASPTLPCEPVGPEIANLSGEVLLQEDVLKDEWQEPMQAELLTAHKGNVSDYDPEDMEYGM 197
            ::....||..|..|..|                    .:|...                     :
  Rat   132 LSHDRDSPPPPPPPPPP--------------------PQPQPT---------------------L 155

  Fly   198 SRDHYHQHAEEQEQ------REMRRLRRSTHSTDHSPPPPRRSHTHSESNDREYIRCSRDKGSRD 256
            .|...|...|:::|      |...|..|    |...||||     ..:.:|...:..|.||    
  Rat   156 KRSLKHADGEKEDQFNGSPPRPQPRGPR----TPPGPPPP-----DDDEDDPMSLPVSGDK---- 207

  Fly   257 WSRSPEYSSHRSRRKRSERSRSVVDEHKWPRTPPASIDSPTRPRSPDTMDYEDEDSRSHYKMQSS 321
                .|...||             :::..|       .||.|...|....|.||.          
  Rat   208 ----EEDVPHR-------------EDYFEP-------ISPDRNSVPQEGQYSDEG---------- 238

  Fly   322 HYRHSSESLHRGERDRDDEDRSCTPQEQFEPILSDDEIIGDDEEDD------------------- 367
              ....|....||.|.||.|......|..:...:.|.|..|||||:                   
  Rat   239 --EVEEEQQEEGEDDEDDVDVDEEEDEDEDDCHTVDSIPDDDEEDEEEEGEEDEEGEGDDGYEQI 301

  Fly   368 AVDAAAIAEYEREL------------EAAAAAAPPAIDAFEPWQKPLLVFEGDMAAHFCKELETL 420
            :.|...||:.|||.            |..|:..|...|.::....|||.|.......|..|:..:
  Rat   302 SSDEDGIADLERETFKYPNFDVEYTPEDLASVPPMTYDPYDRELVPLLYFSCPYKTTFEIEINRM 366

  Fly   421 K----------LLFKKLVLQTRCENVNAFSEEHGA----SVDEREQFVYLGEQLNNQLGYLAQHY 471
            |          .:...|.|   .|.::.:.|:.||    :::|....:..|      |.||    
  Rat   367 KDQGPDKENSGAIEASLKL---TELLDLYHEDRGAKWVTALEEVPSLIIKG------LSYL---- 418

  Fly   472 KRRNFVLQQFFGNDELHLRQAANVLQIALSFQAACMQPQPAFKIRHIKLGARMAELLGSS----- 531
                    |.....:..|.|..:....||:.|.|..|| .|..:|.:|.|.::...|...     
  Rat   419 --------QLKNTKQDSLGQLVDWTMQALNLQVAFRQP-IALNVRQLKAGTKLVTSLAECGAPGV 474

  Fly   532 EELFQHLLKEHKFDIFEAVFRLYHEPYMALSIKLQLLKAVYALLDTRMGIEHFM---GAKNNGYQ 593
            .||.|       ..:...:|.|....:::.|:||...||:.:::....|:|.|:   .::.:|||
  Rat   475 TELLQ-------AGVISVLFDLLFADHVSSSLKLNAFKALDSVISMTEGMEAFLRSTQSEKSGYQ 532

  Fly   594 MIVEAIKTAKLTRTKYALQAIIKKLHLWEGLESVQIWCRRLFVDRII-----IPGNRDQMEDTVI 653
            .::|.|...:..|...|..||::|.|.:|.|..:    :|| .|.|.     :|...:...||..
  Rat   533 KLLELILLDQTVRVVTAGSAILQKCHFYEVLSEI----KRL-GDHIAEKTSSVPNPSEPDHDTDA 592

  Fly   654 TCQQIEFAFE------MLMDALFSSQLSYLQPRRFL-------------------PVSKKFEV-- 691
            ..::....:|      |.||.|.||.:|..:..:.:                   |..|.|..  
  Rat   593 VLERANPDYENEVEASMDMDLLESSNISEGEIEKLINLLEEVFHLMETAPHTMIQPPVKSFPTIA 657

  Fly   692 -VTDPTAQ----------RSFG-----NALQ---------------------------------- 706
             :|.|..:          ..||     :.||                                  
  Rat   658 RITGPPERDDPYPVLFRGPGFGFEHSNSGLQPSATPVPDGPMASSGLCGHCTHMVHRHTCKQNTH 722

  Fly   707 --SYLGQNSLAESLLVMLANCKELPATT-----YLSMLDLMHTLLRSHVGIDYFVDDAFPVTQTI 764
              .||..:...|.:.::|:    :|.|:     ..:..|::..|.:|..|:.:|:.: :..|..:
  Rat   723 NIRYLHSHHFLELVTLLLS----IPITSAHPGVLQATKDVLKFLAQSQKGLLFFMSE-YEATNLL 782

  Fly   765 VAILLGLDEVPRNPEEKEEKAEKSDAEDKAMEVENEAVEAGGEKPTPPTADEEGKPVAAPISVPA 829
            :..|..|      .::.||:..:||..|.|                                   
  Rat   783 IRALCHL------YDQDEEEGLQSDGVDDA----------------------------------- 806

  Fly   830 PAAAPQVRPRPILRPVLPRLARLGIEMSYKVQTRYHLDAIA-------YAAAAPEYDAVKLATHM 887
                                  ..:.:....||   |..:.       ...|:.|.|...|...:
  Rat   807 ----------------------FALWLQDSTQT---LQCVTELFSHFQRCTASEETDHSDLLGTL 846

  Fly   888 HAIYSQTCDPAGRQHTVEVLGLNNNLKIFMDLIKKEQRLQTQRQLSSPGTKYKSPVLSYAVDMVD 952
            |.:|..|.:|.||.....|..|:.||:..:.|::    ..::..|....:| ||...:||..::.
  Rat   847 HNLYLITFNPVGRSAVGHVFSLDKNLQSLITLME----YYSKEALGDSKSK-KSVAYNYACILIL 906

  Fly   953 ACVRYCEQLDYLIEHGGVILELAKNHETFEPSVSAVLQEMYVYMKPLEAINVFVYDDIMPLVEVI 1017
            ..|:....:..|.:|...:|:|.|..|.     :|.|||:..:::||:.:. |..:.|..|:|.:
  Rat   907 VVVQSSSDVQMLEQHAASLLKLCKADEN-----NAKLQELGKWLEPLKNLR-FEINCIPNLIEYV 965

  Fly  1018 GRSLDYLTTFPG-DLIMAMRILRYLSI-SKPLAGQKAPPVTEELKHRFVALQLYAADGVQLCIQI 1080
            .:::|.|.|..| .|..|:|:|..::. ..|:.||:     ::||.....:||::|:|:...|::
  Rat   966 KQNIDNLMTAEGVGLTTALRVLCNVACPPPPVEGQQ-----KDLKWNLAVIQLFSAEGMDTFIRV 1025

  Fly  1081 MERLCAYFEQP-------GAHAPALMTIQGVHCCQIMLPTLQILRELLSYAILCRDGT--YKDLT 1136
            :::|.:...||       |.....:.||....|...:|.|:  |.|||      |.|:  :||:.
  Rat  1026 LQKLNSILTQPWRLHVNMGTTLHRVTTISMARCTLTLLKTM--LTELL------RGGSFEFKDMR 1082

  Fly  1137 AIDHLVKVYYLLYYFPTRCQAGPEVEQCKMEVVQTLLAYTQ-PNEQ---DEESLHKSLWTLMIRE 1197
            ....||.::.||...|...:...:.::.:.:::..||.:|| .||:   .||:|..:.|:||::|
  Rat  1083 VPSALVTLHMLLCSIPLSGRLDSDEQKIQNDIIDILLTFTQGVNEKLTISEETLANNTWSLMLKE 1147

  Fly  1198 VLKNV-DGPAHFIPGLKLLAELLPLPLPMPQPLCDQLQQQHKQRL-ITERKLWSAHLHPQSGQIA 1260
            ||.:: ..|..|..||.||:|||||||||.   ..|:.:.|...: :..|||||.|||.|:..:.
  Rat  1148 VLSSILKVPEGFFSGLILLSELLPLPLPMQ---TTQVIEPHDISVALNTRKLWSMHLHVQAKLLQ 1209

  Fly  1261 KLVEALAPSSFPQLSELLQRVCMQLSDLAPNMTLLIAKTITELLCNEYQTSNCIP----TTNLER 1321
            ::|.:.:.::...:..:|:|:|:||.|||....|||.:|:.:|:..:.|:::...    |:...|
  Rat  1210 EIVRSFSGTTCQPIQHMLRRICVQLCDLASPTALLIMRTVLDLIVEDLQSTSEDKEKQYTSQTTR 1274

  Fly  1322 LLRFSTRLCAFAPLKSSMLSILSG------KFWELFQSLLAL--NEFNDVV-SNCQEAVHRILDS 1377
            ||.....|.:....|.::|.:::|      |:.|:||.||||  :..:.|: ..|.|.|..||.|
  Rat  1275 LLALLDALASHKACKLAILHLINGTIKGDEKYAEIFQDLLALVRSPGDSVIRQQCVEYVTSILQS 1339

  Fly  1378 FLDSGISLISHKSTASPAL---NLAAALPPKELIPRIIDAVFSNLTSVEVTHGISILAVRNLVIL 1439
            ..|..|:||....:..|..   .|:.:||.|||:..|.|.:.:.|.:.|.|:...:..||.::.|
  Rat  1340 LCDQDIALILPSPSEGPGSELEQLSNSLPSKELMAAICDCLLATLANSESTYNCLLTCVRTMMFL 1404

  Fly  1440 TEHDFTFYHLAQLLKQKITEFQAWMERVI--LHNETVEY-NANIESLILLLRS-----------L 1490
            .|||:..:||...|::..:...:.::||:  ...:|.|. :|:::.:..:|.|           |
  Rat  1405 AEHDYGLFHLKSSLRKNSSALHSLLKRVVSTFSKDTGELTSASLDFMRQILNSDAMGCCGDDSGL 1469

  Fly  1491 TQIEPPPAMSAMPHRTLKLGATELAQLVEFQD-------IELAKPPVLSRILTVMEKHKAVANEA 1548
            .::|     ||.|.||:.:.|.||.||::.::       :||.|        .|:|..|...:..
  Rat  1470 MEVE-----SAHPPRTMSINAAELKQLLQSKEESPESLFLELEK--------LVLEHSKEDDSLE 1521

  Fly  1549 ALSD----LKQLILLQASKQEILAGTSTETPPEAEGEANPSASSCSASLTVEPYLPQAEGIVTQY 1609
            :|.|    |||::                   |:.|:..|.:..     .|||.|...|.:...:
  Rat  1522 SLLDNVIGLKQML-------------------ESSGDPLPLSDQ-----DVEPVLSAPESLQNLF 1562

  Fly  1610 EARPIFTRFCATAENAQLTARYWLDPLPIELIE-DMNEPIYERIACDLTDLANVCLNPDLNVAGD 1673
            ..|..:.  .|...:.||.: .|..|...|.|: |:     :.:..||.:|:..|.: |.::..:
  Rat  1563 NNRTAYV--LADVMDDQLKS-MWFTPFQAEEIDTDL-----DLVKVDLIELSEKCCS-DFDLHSE 1618

  Fly  1674 SKRVMNLSGSPQSNREMTPTAPCFRTRRVEVEPATGRPEKKMFVSSVRGRGFARP-------PPS 1731
            .:|.. ||......|..|       |:..::    |:.:.:.|::|.....:..|       ||.
  Rat  1619 LERSF-LSEPSSPGRAKT-------TKGFKL----GKHKHETFITSSGKSEYIEPAKRAHVVPPP 1671

  Fly  1732 RG-------------DLFRSRPPNTSRPPSLHVDDFLALETCGAQPTGPTGYNKIPSMLRGSRVG 1783
            ||             |:||.|..|||||||:|||||:|.|:....|     .:.||...|..:|.
  Rat  1672 RGRGRGGFGQGIRPHDIFRQRKQNTSRPPSMHVDDFVAAESKEVVP-----QDGIPPPKRPLKVS 1731

  Fly  1784 R----------NRGSRISAAAAFRQKKMMRIGSP---------------SSWA--ESP-GSYRSA 1820
            :          |||.|    .||..:.  |..:|               |||:  .:| |:|..:
  Rat  1732 QKISSRGGFSGNRGGR----GAFHSQN--RFFTPPASKGNYSRREGTRGSSWSAQNTPRGNYNES 1790

  Fly  1821 --SDSHFSSSD----SHYSSPHYSGRPRGRGLRSR----PSY 1852
              ..|:|:...    ...||..|...||.|..|.|    ||:
  Rat  1791 RGGQSNFNRGPLPPLRPLSSTGYRPSPRDRASRGRGGLGPSW 1832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
virNP_524900.1 VIR_N 6..263 CDD:292534 76/263 (29%)
VirmaNP_001101385.1 VIR_N 5..235 CDD:292534 84/308 (27%)
MPLKIP 1753..>1858 CDD:292140 20/82 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334877
Domainoid 1 1.000 329 1.000 Domainoid score I1130
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 418 1.000 Inparanoid score I1755
OMA 1 1.010 - - QHG48370
OrthoDB 1 1.010 - - D114891at33208
OrthoFinder 1 1.000 - - FOG0006529
OrthoInspector 1 1.000 - - oto95953
orthoMCL 1 0.900 - - OOG6_107758
Panther 1 1.100 - - LDO PTHR23185
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5505
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

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