DRSC/TRiP Functional Genomics Resources

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Protein Alignment c(3)G and lama5

DIOPT Version :9

Sequence 1:NP_650490.1 Gene:c(3)G / 47765 FlyBaseID:FBgn0000246 Length:744 Species:Drosophila melanogaster
Sequence 2:XP_009294934.1 Gene:lama5 / 321243 ZFINID:ZDB-GENE-030131-9823 Length:3665 Species:Danio rerio


Alignment Length:684 Identity:136/684 - (19%)
Similarity:266/684 - (38%) Gaps:187/684 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 WADIQKLSPHTGIIIHSFIKQYNESLNNLKKKDLVVSKKMRAIAMD--SLKKKSENISLKEKLTN 173
            |..:.:|:.....|.:: |..||.:|:..:.:..|:..::..|..|  .|:||:           
Zfish  2181 WTQLNRLNASIADIANA-ITNYNSTLDKSRNRASVLEGELEIIDSDIKDLEKKA----------- 2233

  Fly   174 MELELTQLKTDLIEQQEKNAENIQKYTEINKKYTHCEQHYDKELEIIKVCVEKKNSELRDAQSRM 238
               .:||.|.|.:|.            .||..:|..::.:.    .||       ..:||.:   
Zfish  2234 ---SVTQKKKDALED------------NINSTHTRAQELFG----FIK-------GIMRDVK--- 2269

  Fly   239 ALQAQELNNMQQTNRELAGACENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSAQKEK 303
                   :.:||.||    ..:|..:.::|.::|:     ::.:::.:..|::.:..|....|.|
Zfish  2270 -------DIIQQVNR----TAQNETQVMDEKDLAR-----KIAEVESMLRDMRFRGFDYQKNKAK 2318

  Fly   304 FE---ANIL----------------QLSSDLNAKMLDCAQLEDRIEQLPIEANKALSKLQRDLEA 349
            .|   ||.|                .::.::..|:   .|..:::..|....|:|::...:.:||
Zfish  2319 NELDQANNLVDRVINEIANRTWNNEAVAENIRNKL---KQFNEQLMDLRDAMNEAVNNTAQTVEA 2380

  Fly   350 SELQFVDQQRLTDQATRELELVRNEINTFKTLIEEKERRHVS----LSDELTQMTERLSELADIN 410
            :.   ::|:.|.|        ::.::|:    :.||.:..||    ..|::||:.:.||.|.|..
Zfish  2381 NN---INQKHLED--------LQKKVNS----LHEKYKEVVSQLQMAEDDVTQVNDLLSMLQDSK 2430

  Fly   411 ESYINELTETKLKHSQEIKDQADAYEIVVQELKESLNK--ASVDFTQLKSNSEKLHKETLLQVSE 473
            |.|            :.:..|.|...   |.|.|.:.|  .:.:...|...:|| |.|.|.|::.
Zfish  2431 EDY------------EHLAAQLDGAR---QPLAEKVQKYAPAANKIPLVEAAEK-HAEMLEQLAN 2479

  Fly   474 LQEKLIEMVSHRSNQEELIKRLGNEIQEKTHNFEEELKRQQEQLANQMQMKATEVES---EN--- 532
            ....||.    .|||:..|:|..|..:..|:.....|:      |....:||.|..|   ||   
Zfish  2480 NLSSLIS----GSNQDNFIQRALNASRAYTNIINSVLE------AETTALKANETASMALENIRD 2534

  Fly   533 ----------KRNAVEIQKLKSELEERNKAFKAQQDKLEYLISDHDTLKSAIINLQAEKKEIESE 587
                      |..:.|:.|...||...:::.|.:.|.::..:.|.:..|..::.   :.|:|:::
Zfish  2535 KDLPAQAAALKNQSTELLKSAEELNNSSQSLKPRVDTIKMSLLDAEKKKEKMLQ---DLKDIQNK 2596

  Fly   588 LSTAK------VKFSEELQSQKDNLMKKVSELELEIKRKETELIELEREKNNEMAVLQFKMNRIN 646
            |:.::      :..::....|.:|.:..||.:...|::   :|.|.:::..:..|..:    .||
Zfish  2597 LNVSRDDIVNSISAAKSAVEQANNTVANVSGVLAPIQK---QLEEWQKQYGDSNATSE----DIN 2654

  Fly   647 CLIDQPVTTIKQLKDSKGPTRTESIP----TKVQPENTDEFSSTARK-----RNARRQKITTYSS 702
            ..::...|::..|.|:. |...:.:.    |..||.|..:.....|:     |||..:  .:.|.
Zfish  2655 KALNDANTSVAALSDTL-PKLIKKLDRLHNTTFQPSNISDSIQRIRQLIEQARNAANK--VSVSM 2716

  Fly   703 DFDSGDDIPIVGNSLSGKRAKLCAPIKPQNNIDM 736
            .|          |..||.:.:     .|.|..|:
Zfish  2717 QF----------NGKSGVQVR-----TPSNVADL 2735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
c(3)GNP_650490.1 iSH2_PI3K_IA_R 363..>516 CDD:304922 37/158 (23%)
lama5XP_009294934.1 Laminin_N 51..290 CDD:278484
EGF_Lam 291..339 CDD:238012
EGF_Lam 350..413 CDD:238012
EGF_Lam 421..463 CDD:214543
EGF_Lam 482..529 CDD:214543
Laminin_EGF 529..577 CDD:278482
Laminin_EGF 575..622 CDD:278482
Laminin_EGF 620..667 CDD:278482
EGF_Lam 664..711 CDD:238012
Laminin_EGF 713..759 CDD:278482
Laminin_EGF 762..812 CDD:278482
EGF_Lam 815..858 CDD:238012
Laminin_EGF 1421..1469 CDD:278482
Laminin_EGF 1511..1561 CDD:278482
Laminin_EGF 1559..1607 CDD:278482
Laminin_B 1672..1796 CDD:278481
EGF_Lam 1842..1881 CDD:238012
Laminin_EGF 1894..1947 CDD:278482
EGF_Lam 1949..2002 CDD:238012
Laminin_EGF 2004..2048 CDD:278482
Laminin_EGF 2051..2099 CDD:278482
Laminin_EGF 2099..>2128 CDD:278482
mycoplas_twoTM 2158..>2351 CDD:275320 40/226 (18%)
Laminin_I 2171..2429 CDD:283627 61/322 (19%)
COG1340 2319..2558 CDD:224259 61/282 (22%)
BAR 2383..2637 CDD:299863 64/297 (22%)
Laminin_II 2611..2741 CDD:283628 30/150 (20%)
LamG 2757..2896 CDD:214598
LamG 2932..3075 CDD:238058
LamG 3110..3249 CDD:238058
LamG 3320..3466 CDD:238058
LamG 3490..3642 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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