DRSC/TRiP Functional Genomics Resources

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Protein Alignment c(3)G and LAMA1

DIOPT Version :9

Sequence 1:NP_650490.1 Gene:c(3)G / 47765 FlyBaseID:FBgn0000246 Length:744 Species:Drosophila melanogaster
Sequence 2:NP_005550.2 Gene:LAMA1 / 284217 HGNCID:6481 Length:3075 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
c(3)GNP_650490.1 iSH2_PI3K_IA_R 363..>516 CDD:304922
LAMA1NP_005550.2 LamNT 16..268 CDD:214532
EGF_Lam 270..317 CDD:238012
Laminin_EGF 397..456 CDD:278482
Laminin_EGF 454..500 CDD:278482
Laminin_B 568..696 CDD:278481
EGF_Lam 741..789 CDD:238012
Laminin_EGF 791..846 CDD:278482
EGF_Lam 848..900 CDD:238012
Laminin_EGF 902..948 CDD:278482
Laminin_EGF 951..998 CDD:278482
Laminin_EGF 998..1041 CDD:278482
Laminin_EGF 1044..1092 CDD:278482
Laminin_EGF 1090..1147 CDD:278482
LamB 1213..1344 CDD:214597
Laminin_EGF 1403..1449 CDD:278482
Laminin_EGF 1452..1506 CDD:278482
Laminin_EGF 1509..1556 CDD:278482
Laminin_I 1567..1830 CDD:283627
BAR 1609..1841 CDD:299863
Laminin_II 2011..2145 CDD:283628
LamG 2141..2280 CDD:214598
LamG 2307..2463 CDD:238058
Laminin_G_1 2514..2658 CDD:278483
Laminin_G_1 2743..2872 CDD:278483
LamG 2892..3043 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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