DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abd-B and HB6

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_565536.1 Gene:HB6 / 816775 AraportID:AT2G22430 Length:311 Species:Arabidopsis thaliana


Alignment Length:150 Identity:39/150 - (26%)
Similarity:55/150 - (36%) Gaps:30/150 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 TSTSSYEPPTYSSPGG------LRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQVSVRK 389
            |||....|..|   ||      |.||..|                     ...:.|..|.|.:.:
plant    21 TSTDEQSPRRY---GGREFQSMLEGYEEE---------------------EEAIVEERGHVGLSE 61

  Fly   390 KRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQN 454
            |::..|..|...|||.|.....:..:::.:||:.|.|..|||.:||||||.:.|.....:.....
plant    62 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVL 126

  Fly   455 NNNNSSSNHNHAQATQQHHS 474
            .....|..||.....:.:.|
plant   127 KTQYDSLRHNFDSLRRDNES 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 20/55 (36%)
HB6NP_565536.1 Homeodomain 62..115 CDD:459649 20/52 (38%)
HALZ 117..158 CDD:460477 3/29 (10%)

Return to query results.
Submit another query.