Protein Alignment Abd-B and Hoxa6

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 84/280 - (30%)
• Similarity: 122/280 - (43%)
• Gaps: 68/280 - (24%)

  Fly   203 VAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEG---- 263
            |.||    .|.|:.|.::.....:.|.|....|:|..|.....:|...|.:|:...|....
  Rat     6 VNPT----FPGSLPSGQDSFLGQLPLYPAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLA 66

  Fly   264 ---FNQHYGSG--YYDRKHMFAYPYPET-QFPVGQY--WGP--NYRPDQTTSAAAAAAYMNEAER 318
               .:..||:.  |.|:....|.|...: |...|.|  :.|  .|:||   |::.....::|
  Rat    67 CNRASYEYGASCFYSDKDLSGASPSGNSKQRGPGDYLHFSPEQQYKPD---SSSVQGKALHE--- 125

  Fly   319 HVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTG 383
                      |||...      |:||    .||.....:|.|  |...|:.|
  Rat   126 ----------EGTDRK------YTSP----VYPWMQRMNSCA--GAVYGSHG------------- 155

  Fly   384 QVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQR 448
                |:.|:.|:::|||||||||.||.|:::::|.|:|..|.|||||:||||||||||.||.
  Rat   156 ----RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE--- 213

  Fly   449 QANQQNNNNNSSSNHNHAQA 468
              |:..|:..:|...:.|:|
  Rat   214 --NKLINSTQASGEDSEAKA 231

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	34/55 (62%)
Hoxa6	NP_001178016.1	Homeodomain	156..212	CDD:459649	34/55 (62%)