DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and hoxa9b

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_571608.1 Gene:hoxa9b / 58048 ZFINID:ZDB-GENE-000823-2 Length:258 Species:Danio rerio


Alignment Length:412 Identity:108/412 - (26%)
Similarity:135/412 - (32%) Gaps:167/412 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LHTTSHHHSAH-PHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLV 106
            |.|.|::..:| ||     :...|.....|...|:|||.::.|                      
Zfish     4 LGTLSYYADSHLPH-----ENDDHLAPRFSSGPVVQQQSRELT---------------------- 41

  Fly   107 AVQQQHLPAPQQQQQLQQQQQQQQQQLATTPVAGA-LSPAQTPTGPSAQQQQHLTSPHHQQLPQQ 170
                          .|:..:|:.....|.:.:.|| .||.| |||.|.....::   ||      
Zfish    42 --------------LLEYSEQEPYTFQAKSSIFGASWSPVQ-PTGASIAYHPYI---HH------ 82

  Fly   171 QTPNSVASGASSNLQQQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPA 235
                ..::|.|..                        |||.|.:             |.||  ||
Zfish    83 ----PCSTGDSDG------------------------ASVRPWA-------------LEPL--PA 104

  Fly   236 IRAGP--GFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNY 298
            :   |  |..|||...:|            .....|||                           
Zfish   105 L---PFTGLSTDTHQDIK------------LEPLVGSG--------------------------- 127

  Fly   299 RPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGL-RGYPSENYSSSGASG 362
                            |...|....|......|.|....|....|.|.. ...|:|.......| 
Zfish   128 ----------------ECTTHTLLVAETDNNTTQTERKVPDDAVSNGSHDEKIPAETKLDLDPS- 175

  Fly   363 GLSVGAVGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLT 427
                    .|..:..|..|....|.||||.||:|.||||||||||||.|:|:.:|:|:||.|.||
Zfish   176 --------KCNQDNPLSNWLHAKSTRKKRCPYTKHQTLELEKEFLFNMYLSRDRRYEVARLLNLT 232

  Fly   428 ERQVKIWFQNRRMKNKK-NSQR 448
            ||||||||||||||.|| |..|
Zfish   233 ERQVKIWFQNRRMKMKKCNKDR 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 42/55 (76%)
hoxa9bNP_571608.1 Hox9_act 1..174 CDD:461369 57/321 (18%)
Homeodomain 193..249 CDD:459649 42/55 (76%)

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