DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and hoxc12a

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001104229.1 Gene:hoxc12a / 562600 ZFINID:ZDB-GENE-000822-6 Length:274 Species:Danio rerio


Alignment Length:297 Identity:86/297 - (28%)
Similarity:125/297 - (42%) Gaps:85/297 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 PNSVASG---ASSNLQQQQQQQNAAVAP--------GQTQIVAPTTASVSPSSVSSQKEDINMSI 226
            ||..|||   |........::.|....|        |..|....:..|::||        .|.|.
Zfish    27 PNFRASGGQLAGLPSLSYPRRDNVCSLPWNPSESCNGYPQSYFSSPVSINPS--------FNRSC 83

  Fly   227 QLAPLHIPAIRAGPGFETDTSA----AVKRH---------TAHWAYNDEGFNQHYGSGYYDRKHM 278
            ::..|.......|....|..|.    ::||.         :.|..:|..|.:..:....|..:|:
Zfish    84 EITRLEESKCYYGNSSSTRDSCSDNNSLKREERARDTSVSSDHGMHNGMGNSGTFSKYDYGTEHL 148

  Fly   279 FAYPYPETQFPVGQYWGPNYRPD-QTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYS 342
                   ||.|          |. |:..:.::::.:|              ||..||:.:|.|..
Zfish   149 -------TQDP----------PSCQSLESDSSSSVLN--------------EGGKTSASDPQTLV 182

  Fly   343 SPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFL 407
            |.|        |::|:.|.||   ||  |..|   :|..|     |||||||||.|..|||.||:
Zfish   183 SQG--------NHASNIAGGG---GA--PWYP---MHTRT-----RKKRKPYSKLQLAELEGEFM 226

  Fly   408 FNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKK 444
            .|.::::|:|.||:..|.|:::||||||||||||.|:
Zfish   227 LNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 32/52 (62%)
hoxc12aNP_001104229.1 Homeobox 209..262 CDD:278475 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0487
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5302
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
32.860

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