DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and slou

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster


Alignment Length:546 Identity:132/546 - (24%)
Similarity:176/546 - (32%) Gaps:223/546 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQQH-HLQQQQQQQQQQEQQHLQEQQQHLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQ 64
            :||| ||        .|..|.|...|||   :|||.|.|...|.|..||.| .|||         
  Fly   182 LQQHPHL--------LQNPQFLAAAQQH---MHHHQHQHHQHPAHPHSHQH-PHPH--------- 225

  Fly    65 HAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQQ 129
                                |..|..|..:.::              ||.||...          
  Fly   226 --------------------PHPHPHPHPSAVF--------------HLRAPSSS---------- 246

  Fly   130 QQQLATTPVAGALSPAQTPTGPSAQQQQHLT--------SPHHQQLPQQQTPNSVASGASSNLQQ 186
                :|.|.:.|.||...||.|:....|.::        .||..|.||||   .||  |.|::..
  Fly   247 ----STAPPSPATSPLSPPTSPAMHSDQQMSPPIAPPQNPPHSSQPPQQQ---QVA--APSDMDL 302

  Fly   187 QQQQQNAAVAPGQTQ-----IVAPTTASVSPSSVSSQK-----------EDINMSIQLAPLHIPA 235
            ::.:..||||...||     .:|..:.|||.:|:|...           .|....|||..|...|
  Fly   303 ERIKLVAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDYGFRIQLGGLAAAA 367

  Fly   236 IRAGPGFETDTSAAVKRHTAHWAY-------------NDEGFNQHYGSGYYDRKHMFAYPYPETQ 287
            ..|         ||..|..|...|             |||..|.                     
  Fly   368 AAA---------AATSRQIAAATYARSDTSEELNVDGNDEDSND--------------------- 402

  Fly   288 FPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSA-----AARQSVEGTSTSSYEPPTYSS---P 344
               |.:..|:..|...|.:..::|..|.:....||     ||.:.:..:..:..:|..::.   |
  Fly   403 ---GSHSTPSVCPVDLTRSVNSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNKLP 464

  Fly   345 GGLRGYP-------------------SENYSS--------------------------------- 357
            .|..|:|                   ||:.|:                                 
  Fly   465 SGPFGHPRQWSYERDEEMQERLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSR 529

  Fly   358 --SGASGGLSVGAVGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWEL 420
              .|.|||   |..|...|             |:.|..::..|.:.||.:|....|:|..:|..|
  Fly   530 NGDGKSGG---GGGGGSKP-------------RRARTAFTYEQLVSLENKFKTTRYLSVCERLNL 578

  Fly   421 ARNLQLTERQVKIWFQNRRMKNKKNS 446
            |.:|.|||.||||||||||.|.||.:
  Fly   579 ALSLSLTETQVKIWFQNRRTKWKKQN 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 25/52 (48%)
slouNP_001262808.1 Homeobox 549..601 CDD:278475 25/51 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 42 1.000 Inparanoid score I5492
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.050

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