DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and lbl

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001262805.1 Gene:lbl / 42541 FlyBaseID:FBgn0008651 Length:410 Species:Drosophila melanogaster


Alignment Length:419 Identity:84/419 - (20%)
Similarity:133/419 - (31%) Gaps:171/419 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 SPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQQQQQLAT 135
            :|.:::.::.|  .|...:.|..|.::....|..|.:.:|:  .|...|:|||:..|.|.|.|  
  Fly    88 APLALINERLQ--IPLVPNCPPPAALHTFLSPALLHSYEQR--LAWDYQRQLQEHFQAQAQLL-- 146

  Fly   136 TPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQT--PNSVASGASSNLQQQQQQQNAAVAPG 198
                                             :|.|  |..:||...|:    ::.|.::.:.|
  Fly   147 ---------------------------------RQMTLNPAIIASEDGSS----ERSQRSSSSNG 174

  Fly   199 QTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEG 263
            .|:..:||.|    ..|..:.::..|.:                                     
  Fly   175 STECCSPTQA----EKVEKRSQEDRMEV------------------------------------- 198

  Fly   264 FNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSV 328
                                            |...|:                        :..
  Fly   199 --------------------------------PKKSPE------------------------EQP 207

  Fly   329 EGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQVSVRKKRKP 393
            :|.|.||.:.|.    ..|....::|:........|::.|.   ..||           :||||.
  Fly   208 KGASKSSGDTPL----DALFQLSTKNFDEEQDPATLNIFAT---RSNP-----------KKKRKS 254

  Fly   394 YSKF---QTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMK-------NKKNSQR 448
            .:.|   |..||||.||:..|:|...|.|:|..|.|:..||..||||||.|       .||:.|.
  Fly   255 RTAFTNQQIFELEKRFLYQKYLSPADRDEIAGGLGLSNAQVITWFQNRRAKLKRDMEELKKDVQC 319

  Fly   449 QANQQNNNNNSSSNHNHAQATQQH-HSGH 476
            :.....:.:.:.|:|||....||| |..|
  Fly   320 EKIPDQSADPNRSHHNHPHYHQQHQHYAH 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 28/65 (43%)
lblNP_001262805.1 COG5576 206..332 CDD:227863 42/143 (29%)
Homeodomain 252..308 CDD:459649 26/55 (47%)

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