Protein Alignment Abd-B and abd-A

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 546
• Identity: 139/546 - (25%)
• Similarity: 193/546 - (35%)
• Gaps: 198/546 - (36%)

  Fly     2 QQHHLQQQQQQQQQQEQQHLQEQQQHLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHA 66
            ||||.|.|||....|:||||..|||.    |||.:..|...|               |.|||||.
  Fly   122 QQHHPQVQQQHLNHQQQQHLHHQQQQ----HHHQYSSLSAAL---------------QLQQQQHH 167

  Fly    67 VVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQQQQ 131
            :...:.::|          .:|.   ||                                  .||
  Fly   168 ISKLAAAAV----------ASHG---HA----------------------------------HQQ 185

  Fly   132 QLATTPVAG-------ALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQTPNSVASGASSNLQQQQQ 189
            .|.|.|.||       :.||:.:.:|.|:.         |:.| ...:|.|.::.||::......
  Fly   186 LLLTPPSAGNSQAGDSSCSPSPSASGSSSL---------HRSL-NDNSPGSASASASASAASSVA 240

  Fly   190 QQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAG----PGFETDTSAAV 250
            ...||.|...:...|..|:.:.| .||:.               |:...|    .||......:.
  Fly   241 AAAAAAAAAASSSFAIPTSKMYP-YVSNH---------------PSSHGGLSGMAGFTGLEDKSC 289

  Fly   251 KRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNE 315
            .|      |.|...|.:        :.|........||  .|::       |..:|||:|
  Fly   290 SR------YTDTVMNSY--------QSMSVPASASAQF--AQFY-------QHATAAASA----- 326

  Fly   316 AERHVSAAARQS--VEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGL 378
                ||||:..:  |:....:..:|.:...||            :|.:||..:..: |..|...|
  Fly   327 ----VSAASAGAIGVDSLGNACTQPASGVMPG------------AGGAGGAGIADL-PRYPWMTL 374

  Fly   379 HEWTGQ---------------VSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTE 428
            .:|.|.               ...|:.|:.|::||||||||||.||.|:::::|.|:|..|.|||
  Fly   375 TDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTE 439

  Fly   429 RQVKIWFQNRRMKNKK---------------------------------NSQRQANQQNNNNNSS 460
            ||:||||||||||.||                                 |.|.|..||.......
  Fly   440 RQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQQQQ 504

  Fly   461 SNHNHAQATQQHHSGHHLNLSLNMGH 486
            ......|..||....||..::.|.||
  Fly   505 QQQQQHQQQQQQPQDHHSIIAHNPGH 530

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	35/55 (64%)
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	35/55 (64%)
		Abdominal-A	456..478	CDD:403567	0/21 (0%)