Protein Alignment Abd-B and Nanog

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001094251.1
• Gene: Nanog / 414065
• RGDID: 1303178
• Length: 312
• Species: Rattus norvegicus
• Alignment Length: 203
• Identity: 55/203 - (27%)
• Similarity: 85/203 - (41%)
• Gaps: 25/203 - (12%)

  Fly   295 GPNYRP------DQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSE 353
            ||:..|      :...|:...|.::  .|.:.|.....:.|...|.:..||..|....|:..|.
  Rat     7 GPHSLPSCEEASNSGDSSPMPAVHL--PEENYSCLQVSATEMLCTETASPPPSSGDLPLQDSPD- 68

  Fly   354 NYSSSGASGGLSVGAVGP-CTPNPGLHEWTGQVSVRKK-RKPYSKFQTLELEKEFLFNAYVSKQK 416
              |||.....||    || ....|...|....::.::| |..:|:.|...|:..|....|:|.|:
  Rat    69 --SSSNPKLKLS----GPEADEGPEKKEENKVLTKKQKMRTVFSQAQLCALKDRFQRQRYLSLQQ 127

  Fly   417 RWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSNHNHAQATQ-----QHHSGH 476
            ..:|:..|.|:.:|||.||||:|||.|:   .|.||....:|..:....|....     .:..|:
  Rat   128 MQDLSTILNLSYKQVKTWFQNQRMKCKR---WQKNQWLKTSNGLTQKGSAPVEYPSIHCSYSQGY 189

  Fly   477 HLNLSLNM 484
            .:|.|.|:
  Rat   190 LMNASGNL 197

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	22/56 (39%)
Nanog	NP_001094251.1	Homeodomain	100..155	CDD:459649	22/54 (41%)
		PTZ00395	<184..>291	CDD:185594	4/14 (29%)