Protein Alignment Abd-B and cdx1a

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 205
• Identity: 62/205 - (30%)
• Similarity: 89/205 - (43%)
• Gaps: 44/205 - (21%)

  Fly   277 HMFAY---PYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEP 338
            |:..|   |||:..   |.:.||              |..|:.  |.:.::.....|..:....|
Zfish    25 HLNVYPSAPYPDYS---GYHPGP--------------ALGNDL--HHTGSSWSPGFGPGSRDDWP 70

  Fly   339 PTYSSPGGLRGYPSENYSSS-------GASGGLSVGAVGP-------CTP-NPGLHEWTGQVSVR 388
            |.|....| ...|:.....|       |...|..|....|       ..| |||     |:...:
Zfish    71 PLYGHGTG-HSLPANGVEVSVLPSVDQGLLSGAPVDREEPQDWMRRSAVPTNPG-----GKTRTK 129

  Fly   389 KK-RKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQ 452
            .| |..||..|.|||||||.|:.|::.:::.|||..|.|:||||||||||||.|.:|.::::..|
Zfish   130 DKYRVVYSDVQRLELEKEFHFSRYITIRRKAELAGTLNLSERQVKIWFQNRRAKERKMNKKRLQQ 194

  Fly   453 QNNNNNSSSN 462
            ...:::..:|
Zfish   195 VQQSSSGLAN 204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	32/56 (57%)
cdx1a	NP_998001.2	Caudal_act	11..123	CDD:461413	24/117 (21%)
		Homeodomain	131..186	CDD:459649	32/54 (59%)