DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and Lmx1a

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:562 Identity:107/562 - (19%)
Similarity:151/562 - (26%) Gaps:246/562 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 QQQH------------AVVASSPSSVLQQQQQQSTPTT---HSTPTHAVMYEDPPPVPLVAVQQQ 111
            ||.|            ::.|||.:|:.......:.||:   :::||        ....|....||
  Fly    22 QQNHGGARFLDNPNPGSMTASSGNSLHLSNSNNNLPTSISGNNSPT--------ATASLTGQHQQ 78

  Fly   112 HLPAPQQQQQ----LQQQQQQQQQQLATTPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQT 172
            |.....||||    .|.||.|||...:||||  .::...||||.|........|.|:     ...
  Fly    79 HQQQQHQQQQQHPHQQHQQHQQQHAASTTPV--PINSCPTPTGHSPLSSSSSNSNHN-----NNN 136

  Fly   173 PNSVASGASSNLQQQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIR 237
            .|:....:|:||........||.....:   |...|:.||:..|.....:..::..|.....|..
  Fly   137 NNNNGGSSSNNLHSACNTLTAAAVAAAS---AAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAA 198

  Fly   238 AGPGFETDTS-AAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPD 301
            |.....|.|. ||.....|:.:.|..|.....|:|.                      |......
  Fly   199 AAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGN----------------------GNGNGGG 241

  Fly   302 QTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSV 366
            ..|::||||:.:                                           |:..||...|
  Fly   242 AATASAAAASKL-------------------------------------------SADCSGRTEV 263

  Fly   367 GAVGPCTPNPGLHEWTGQ--------------------------------VSVRKK--------- 390
            |.: .|..|..|.|..||                                ..||..         
  Fly   264 GHI-KCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYD 327

  Fly   391 ---------------------------------------RKPYSKFQTL------------ELEK 404
                                                   |.|..|.:..            :|||
  Fly   328 RLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEK 392

  Fly   405 EFLFNA--------------------------------YVSKQK-----------------RWEL 420
            |....|                                ..|:|:                 |..|
  Fly   393 EMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREAL 457

  Fly   421 ARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSN 462
            |::..|:.|.|::||||:|.|.|| .||:|.|...:...|.:
  Fly   458 AKDTGLSVRVVQVWFQNQRAKMKK-IQRKAKQNGGSGGGSGS 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 22/161 (14%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 5/51 (10%)
LIM 333..388 CDD:295319 3/54 (6%)
Homeobox 427..480 CDD:278475 14/52 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 00.000 Not matched by this tool.
22.030

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