DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and Awh

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster


Alignment Length:159 Identity:34/159 - (21%)
Similarity:57/159 - (35%) Gaps:43/159 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 QSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQVSVRKK 390
            ::|||.:|||.|           |...:.|..|                           ..::.
  Fly   125 ETVEGGTTSSDE-----------GCDGDGYHKS---------------------------KTKRV 151

  Fly   391 RKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNN 455
            |..:::.|...|:..|..::....|....:|....|::|..::||||.|.:.||:.....|:...
  Fly   152 RTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKHIHAGKNKIRE 216

  Fly   456 NNNSS-SNHNHAQATQQHHSG----HHLN 479
            ...|| :.|.:.|.|....:.    .|||
  Fly   217 PEGSSFARHINLQLTYSFQNNAQNPMHLN 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 13/55 (24%)
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeodomain 149..205 CDD:459649 13/55 (24%)
Blue background indicates that the domain is not in the aligned region.

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