Protein Alignment Abd-B and Cdx1

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001406562.1
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 235
• Identity: 75/235 - (31%)
• Similarity: 97/235 - (41%)
• Gaps: 66/235 - (28%)

  Fly   271 GYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEA-ERHVSAAARQSVEGTSTS 334
            ||...|....||.|.....:| ...|.|.|  ...|.|...|.:.| ..||..|..
  Rat     4 GYVLDKDSPVYPGPARPSSLG-LGPPTYAP--PGPAPAPPQYPDFAGYTHVEPAPA--------- 56

  Fly   335 SYEPPTY-----------------------SSPGGLRGYPSENYSSSGASGGLSVGAV-----GP 371
              .|||:                       :||..|...|..::|...|..|...|.:     ||
  Rat    57 --PPPTWAAPFPAPKDDWAAAYGPGPAVPAASPAPLAFGPPPDFSPVPAPPGPGPGILAQSLGGP 119

  Fly   372 CTP-NPGL-----HEW------------TGQVSVRKK-RKPYSKFQTLELEKEFLFNAYVSKQKR 417
            ..| :||:     :||            :|:...:.| |..|:..|.|||||||.::.|::.:::
  Rat   120 GAPSSPGVQRRTPYEWMRRNVAAAGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRK 184

  Fly   418 WELARNLQLTERQVKIWFQNRRMK----NKKNSQRQANQQ 453
            .|||.||.||||||||||||||.|    |||..|:|..||
  Rat   185 SELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQQQQ 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	33/60 (55%)
Cdx1	NP_001406562.1	Caudal_act	13..140	CDD:461413	32/140 (23%)
		Homeodomain	156..211	CDD:459649	32/54 (59%)