Protein Alignment Abd-B and Lim3

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 430
• Identity: 101/430 - (23%)
• Similarity: 136/430 - (31%)
• Gaps: 149/430 - (34%)

  Fly    40 PQPLHTTSHHHSAHPHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVP 104
            |.|||   |||.....||...|||.|      |...||...|
  Fly     8 PPPLH---HHHQHQHQLQHPPQQQPH------PHQQLQHPLQ----------------------- 40

  Fly   105 LVAVQQQHLPAPQQQQQLQ---QQQQQQQQQLATTPVAGALSPAQTPTGPSAQQQQHLTSPHHQQ 166
                |||||.|....||.|   .|||||||||..||.|..|      .|...|||||   |||..
  Fly    41 ----QQQHLSAMDNHQQHQPHIHQQQQQQQQLPPTPQASHL------VGGQQQQQQH---PHHNH 92

  Fly   167 LPQQQ---TPNSVASGASSNLQQQQQQQNAAVAP---GQTQIVAPTTASVSPSSVSSQKEDINMS 225
            |...|   .|..|.:..|.|...:      |..|   |..:::.               :...:.
  Fly    93 LAVDQDDPNPELVLALISRNRALE------ATIPKCGGCHELIL---------------DRFILK 136

  Fly   226 IQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPY------- 283
            :.....|...::..              ..|...||:.|.:   :|....|..|...|
  Fly   137 VLERTWHAKCLQCS--------------ECHGQLNDKCFAR---NGQLFCKEDFFKRYGTKCSAC 184

  Fly   284 ----PETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSP 344
                |.||  |.:....|....|....|..:..:|..:.......|:.:
  Fly   185 DMGIPPTQ--VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLI---------------- 231

  Fly   345 GGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFN 409
                  ...:|..:.|.|....|::....||               ::|.:.....:||.  |..
  Fly   232 ------CKRDYEEAKAKGLYLDGSLDGDQPN---------------KRPRTTITAKQLET--LKT 273

  Fly   410 AYVSKQK-----RWELARNLQLTERQVKIWFQNRRMKNKK 444
            ||.:..|     |.:|:::..|..|.|::||||||.|.|:
  Fly   274 AYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	19/60 (32%)
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	8/82 (10%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	9/78 (12%)
		Homeodomain	257..313	CDD:459649	19/57 (33%)