DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and lms

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:XP_555988.3 Gene:lms / 3289950 VectorBaseID:AGAMI1_011670 Length:479 Species:Anopheles gambiae


Alignment Length:279 Identity:80/279 - (28%)
Similarity:109/279 - (39%) Gaps:65/279 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 TQIVAPTTASVSPSS------VSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWA 258
            |..:|.:..:.:|||      |::.:...:.||:    |:.|.....|..:.:|||..|      
Mosquito    16 TSTMASSVVNSTPSSMHHVDPVANNRVKNSFSIE----HLLAKPDRSGTASTSSAACYR------ 70

  Fly   259 YNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAA---AYMNEAERHV 320
                        |..||   .|..|| ...|...:....|:...|.||:|..   ...||.....
Mosquito    71 ------------GMDDR---LASSYP-IAHPAQLHNSMVYQTLMTRSASAVEFLDVNKNETSAVP 119

  Fly   321 SAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWTGQV 385
            .||.|...|...:||   |..|.........||..|...|||||:.            |:     
Mosquito   120 FAADRPPSERAESSS---PESSCNEDTMDNCSEIASEGSASGGLAA------------HD----- 164

  Fly   386 SVRKK--RKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQR 448
             .|||  |..:|..|...||.||....|:|..||..||:.|.|||.|:||||||||.|.|:    
Mosquito   165 -DRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLHLTETQIKIWFQNRRTKWKR---- 224

  Fly   449 QANQQNNNNNSSSNHNHAQ 467
               :...:..|.::|.::|
Mosquito   225 ---KYTADVESLASHYYSQ 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 30/57 (53%)
lmsXP_555988.3 None

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