Protein Alignment Abd-B and Hoxc5

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 223
• Identity: 73/223 - (32%)
• Similarity: 106/223 - (47%)
• Gaps: 48/223 - (21%)

  Fly   258 AYNDEGFNQHYGS-----------GYYDRKHMFAYPYPETQF-PVGQYWGPNYRPDQTTSAAAA- 309
            |||.:... :|||           |..|....|..|.|.... .|.....|...||:...:|||
  Rat    18 AYNMQTCG-NYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAA 81

  Fly   310 ---------AAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLS 365
                     ||.:|.. .:...|||.::|..:.||             |...|..:.:|...|||
  Rat    82 PGHALGRDEAAPLNPG-MYSQKAARPALEERAKSS-------------GEIKEEQAQTGQPAGLS 132

  Fly   366 VGAVGPCTPNPGLHEWTGQVSV------RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNL 424
                .|..| |.::.|..::.:      ::.|..|:::|||||||||.||.|:::::|.|:|.||
  Rat   133 ----QPPAP-PQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNL 192

  Fly   425 QLTERQVKIWFQNRRMKNKKNSQRQANQ 452
            .|.|||:||||||||||.||:|:.::.:
  Rat   193 CLNERQIKIWFQNRRMKWKKDSKMKSKE 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	33/55 (60%)
Hoxc5	NP_001101586.1	Homeodomain	156..212	CDD:459649	33/55 (60%)