DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abd-B and hoxb9a

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_571196.2 Gene:hoxb9a / 30344 ZFINID:ZDB-GENE-990415-109 Length:249 Species:Danio rerio


Alignment Length:260 Identity:83/260 - (31%)
Similarity:118/260 - (45%) Gaps:44/260 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 SSVSSQKEDINMS----IQLAPLHIPAIRAGPGFETD-TSAAVKRHTAHWAYNDEGFNQHYGSGY 272
            |.:|.:.||.|.|    :|.:....|    |||...: .|.:.:.....::.:...|:.|..:|.
Zfish    14 SIISHEGEDPNASRFSNVQYSSARQP----GPGEHPEFPSCSFQPKPPVFSSSWSPFSSHASNGL 74

  Fly   273 YDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSY- 336
            ....|    ||..||            |..:|.......:::.|.|......:..|:......: 
Zfish    75 PAVYH----PYIPTQ------------PVPSTDTRYLRTWLDCAPRAEPLPGQGQVKMEPLLGHL 123

  Fly   337 -EPPTYSSPGGLRGYPSENYSSSGASGGLSVG-------------AVGPCTPNPGLHEWTGQVSV 387
             |||...   |...|..|:.::...:.|.|.|             ..||...:|..: |....|.
Zfish   124 GEPPKLV---GQHEYILESSTAREINSGHSAGFEDNKDICEGSEDKEGPDQNDPSAN-WLHARSS 184

  Fly   388 RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQ 452
            ||||.||:|:||||||||||||.|:::.:|.|:||.|.||||||||||||||||.||.::.|..:
Zfish   185 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLTERQVKIWFQNRRMKMKKMNKDQPKE 249

  Fly   453  452
            Zfish   250  249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 41/55 (75%)
hoxb9aNP_571196.2 Hox9_act 1..171 CDD:461369 36/179 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..182 7/36 (19%)
Homeodomain 185..241 CDD:459649 41/55 (75%)

Return to query results.
Submit another query.