DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and pou3f3b

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_958855.2 Gene:pou3f3b / 30321 ZFINID:ZDB-GENE-980526-140 Length:443 Species:Danio rerio


Alignment Length:458 Identity:92/458 - (20%)
Similarity:152/458 - (33%) Gaps:97/458 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SAHPHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTT---HSTPTHAVMYEDPPPVPLVAVQQQH 112
            :::|:|.........::|.|.....:||.....|..:   ...||..::..|.....:.|....|
Zfish     5 ASNPYLASSSILSSGSIVHSDSGGGMQQGSAAVTSVSGGYRGDPTVKMVQSDFMQGAMAASNGGH 69

  Fly   113 LPAPQQQQQLQQQQQQQQQQLATTPVAGALSP-AQTPTGPSAQQQQHLTSPHHQQLPQQQTPNSV 176
            :.:...|..............|....|.|.|| :.:|.|.:.       ||..|.:......:.:
Zfish    70 MLSHAHQWVTSLPHAAAAAAAAAVAAAEAGSPWSSSPVGMTG-------SPQQQDVKNNSGRDDL 127

  Fly   177 ASGASSNLQQQQQQQNAAVAPGQTQIVA--PTTASVSPSSVSSQKED----------INMSIQLA 229
            .||.:.:      .:...:.|.||...|  .|||:..||...||::.          ..::..|:
Zfish   128 HSGTALH------HRAPHLGPHQTHAGAWGSTTAAHIPSLTGSQQQQQSLIYSQPGGFTVNGMLS 186

  Fly   230 P------LHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQ-HYGSGYYDRKHMFAYPYPETQ 287
            |      :| |.:..|...|.|.|:    |..|..:..:...| |:|...:|       |:.:..
Zfish   187 PPGSQSLVH-PGLVRGDTPELDHSS----HHHHHHHQHQHHQQAHHGVNSHD-------PHSDED 239

  Fly   288 FPVG---QYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRG 349
            .|..   :::...::                 :|.:.....|:..|.:..:.....:|.....| 
Zfish   240 TPTSDDLEHFAKQFK-----------------QRRIKLGFTQADVGLALGTLYGNVFSQTTICR- 286

  Fly   350 YPSENYSSSGASGGLSVGAVGPCTPNPGLHEW-------TG----------QVSVRKKRKPYSKF 397
                       ...|.:.....|...|.|::|       ||          |...||||......
Zfish   287 -----------FEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVS 340

  Fly   398 QTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSN 462
            ....||..||.....|.|:...||.||||.:..|::||.|||.|.|:.:.....|...:..|...
Zfish   341 VKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTPPGVPQTPEDVYSQVG 405

  Fly   463 HNH 465
            :.|
Zfish   406 NGH 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 21/52 (40%)
pou3f3bNP_958855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..40 5/18 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..150 12/62 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..244 16/73 (22%)
POU 238..312 CDD:197673 11/102 (11%)
Homeobox 333..386 CDD:278475 21/52 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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