Protein Alignment Abd-B and Hoxa9

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001388797.1
• Gene: Hoxa9 / 297099
• RGDID: 1310001
• Length: 271
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 92/280 - (32%)
• Similarity: 114/280 - (40%)
• Gaps: 58/280 - (20%)

  Fly   187 QQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVK 251
            |.|:|.||:|         .....||.|..|:......|..  |:|.....|.|       |||.
  Rat    37 QPQRQAAALA---------EHPDFSPCSFQSKAAVFGASWN--PVHAAGANAVP-------AAVY 83

  Fly   252 RHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPV------GQYWGPNYRPDQTTSAAAAA 310
            .|..|                         ||...|.||      |:|......|  |..|.:.|
  Rat    84 HHHHH-------------------------PYVHPQAPVAAAAPDGRYMRSWLEP--TPGALSFA 121

  Fly   311 AYMNEAERHVS----AAARQSVEGTSTSSYEPPTY---SSPGGLRGYPSENYSSSGASGGLSVGA 368
            ...:.....:.    :|.|.......|.:.....|   |.|......|||...|...:...|.|.
  Rat   122 GLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGD 186

  Fly   369 VGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKI 433
            ..|..||.....|....|.||||.||:|.||||||||||||.|:::.:|:|:||.|.||||||||
  Rat   187 KPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 251

  Fly   434 WFQNRRMKNKKNSQRQANQQ 453
            ||||||||.||.::.:|..:
  Rat   252 WFQNRRMKMKKINKDRAKDE 271

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	41/55 (75%)
Hoxa9	NP_001388797.1	Hox9_act	1..192	CDD:461369	44/199 (22%)
		Homeodomain	206..262	CDD:459649	41/55 (75%)