DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and Hoxd3

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:392 Identity:82/392 - (20%)
Similarity:117/392 - (29%) Gaps:157/392 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 VLQQQQQQSTPTTHSTPTHAVMYEDP---------PPVPLVAVQQQHLPAPQQQQQLQQQQQQQQ 130
            :|.:|.||:......|...|..||:|         ...........|.|.|              
  Rat     1 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKATDAYGYSTPHQPYP-------------- 51

  Fly   131 QQLATTPVAGALSPAQTPTGP-SAQQQQHLTSPHHQ------QLPQQQTPNSVASGASS---NLQ 185
                 .|.|.....:..|:.. |.|....|.:|.|:      ...:..|.||...|..:   .|.
  Rat    52 -----PPAAANSLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLN 111

  Fly   186 QQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAV 250
            .:||       |.|.....||....||::.                                   
  Rat   112 SEQQ-------PPQPPPPPPTLPPSSPTNP----------------------------------- 134

  Fly   251 KRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNE 315
                              |||         .|..:|:      .|||.....:|.:.....:|.|
  Rat   135 ------------------GSG---------VPAKKTK------GGPNASSSSSTISKQIFPWMKE 166

  Fly   316 AERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHE 380
            :.::.......:..|.:.....||                              ||.:       
  Rat   167 SRQNSKQKNSCATSGENCEDKSPP------------------------------GPAS------- 194

  Fly   381 WTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKN 445
                   ::.|..|:..|.:||||||.||.|:.:.:|.|:|..|.|||||:||||||||||.||:
  Rat   195 -------KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 252

  Fly   446 SQ 447
            .:
  Rat   253 QK 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 31/55 (56%)
Hoxd3NP_001257967.1 Homeodomain 195..251 CDD:459649 31/55 (56%)
DUF4074 369..430 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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