DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and Hoxb8

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001178578.1 Gene:Hoxb8 / 24457 RGDID:1586211 Length:243 Species:Rattus norvegicus


Alignment Length:217 Identity:67/217 - (30%)
Similarity:100/217 - (46%) Gaps:54/217 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 TQFPVGQYWGPNY-----------RPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEP- 338
            :::..|:...|||           ||......::..::.:.::      .::...|.|:.|..| 
  Rat    11 SKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQ------IQEFYHGPSSLSTAPY 69

  Fly   339 -------PTYSSPGGLRGY-PSENYSSSG---------------ASGGLSVGAVG-PCTPNP-GL 378
                   ..:..||...|| |.:..|..|               |:.||...|.| ..:|:| .|
  Rat    70 QQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQL 134

  Fly   379 HEW---TGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 440
            ..|   ......|:.|:.||::||||||||||||.|:::::|.|::..|.|||||||||||||||
  Rat   135 FPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 199

  Fly   441 KNKKNSQRQANQQNNNNNSSSN 462
            |.||        :||.:...|:
  Rat   200 KWKK--------ENNKDKFPSS 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 35/52 (67%)
Hoxb8NP_001178578.1 Homeobox 150..203 CDD:395001 35/52 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D414477at33208
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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