Protein Alignment Abd-B and lin-39

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001021164.1
• Gene: lin-39 / 176068
• WormBaseID: WBGene00003024
• Length: 253
• Species: Caenorhabditis elegans
• Alignment Length: 299
• Identity: 80/299 - (26%)
• Similarity: 126/299 - (42%)
• Gaps: 89/299 - (29%)

  Fly   160 TSPHHQQLPQQQTPNSVASGASSNLQQQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINM 224
            |||.....|:...|.|.:|.:||:..                  :.:|:||..|.:.|..| ::.
 Worm     5 TSPSSTDAPRATAPESSSSSSSSSSS------------------SSSTSSVGASGIPSSSE-LSS 50

  Fly   225 SIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFP 289
            :|              |::..|::|             ..:.|:|| |||         |.:...
 Worm    51 TI--------------GYDPMTASA-------------ALSAHFGS-YYD---------PTSSSQ 78

  Fly   290 VGQYW-------GPNYRP---DQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSP 344
            :..|:       ||.| |   ||:.....:....:...:|        :||......:    ...
 Worm    79 IASYFASSQGLGGPQY-PILGDQSLCYNPSVTSTHHDWKH--------LEGDDDDDKD----DDK 130

  Fly   345 GGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHEWT-GQVSVRKKRKPYSKFQTLELEKEFLF 408
            .|:.|...:...:||       |||.|....  :|..| |....:::|..|::.|.|||||||..
 Worm   131 KGISGDDDDMDKNSG-------GAVYPWMTR--VHSTTGGSRGEKRQRTAYTRNQVLELEKEFHT 186

  Fly   409 NAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQ 447
            :.|:::::|.|:|.:|.||||||||||||||||:||.::
 Worm   187 HKYLTRKRRIEVAHSLMLTERQVKIWFQNRRMKHKKENK 225

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	31/55 (56%)
lin-39	NP_001021164.1	Homeodomain	166..222	CDD:459649	31/55 (56%)