DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and Hoxd9

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_038583.1 Gene:Hoxd9 / 15438 MGIID:96210 Length:339 Species:Mus musculus


Alignment Length:350 Identity:110/350 - (31%)
Similarity:146/350 - (41%) Gaps:93/350 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 PTGPSAQQQQHLTSPHHQQLPQQQTPNSVASGASSNLQQQQQQQNAAVAPGQTQIVAPTTA--SV 210
            |.||..|.:                |..||.|.:           ||.|...:...||.::  |.
Mouse    30 PPGPGTQGR----------------PAGVADGPA-----------AATAEFASCSFAPKSSVFSA 67

  Fly   211 SPSSVSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDR 275
            |.|:|::|..   .:..::.|:.|.:...|    ..:|...|:...|.....||....|.|....
Mouse    68 SWSAVAAQPP---AAATMSGLYHPYVSPPP----LAAAEPGRYVRSWMEPLPGFPGGAGGGGGSG 125

  Fly   276 KHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPT 340
            ......|.| ...|.|...|.:|.....|.||.|.|          ||:..|...||:||....|
Mouse   126 GGGGGGPGP-VPSPGGPANGRHYGIKPETGAAPAPA----------AASTSSSSSTSSSSSSKRT 179

  Fly   341 YSSPG----GLRG--YPSENY---SSSGASG-------GLSVGAVG-----PCT--PNPG--LHE 380
            ..|..    |..|  :|..::   .::.|:|       |...||||     .|:  |:||  |.|
Mouse   180 ECSAARESQGSGGPEFPCNSFLRDKAAAATGNGPGVGIGTGPGAVGSSEPSACSDHPSPGCSLKE 244

  Fly   381 ---------------------WTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNL 424
                                 |....|.||||.||:|:||||||||||||.|:::.:|:|:||.|
Mouse   245 EEKQPPQPPQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARIL 309

  Fly   425 QLTERQVKIWFQNRRMKNKKNSQRQ 449
            .||||||||||||||||.||.|:.:
Mouse   310 NLTERQVKIWFQNRRMKMKKMSKEK 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 41/55 (75%)
Hoxd9NP_038583.1 Hox9_act 1..>153 CDD:461369 34/157 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..198 26/94 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..263 11/51 (22%)
Homeodomain 273..324 CDD:459649 37/50 (74%)

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