DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abd-B and Hoxb8

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_034591.1 Gene:Hoxb8 / 15416 MGIID:96189 Length:243 Species:Mus musculus


Alignment Length:217 Identity:67/217 - (30%)
Similarity:100/217 - (46%) Gaps:54/217 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 TQFPVGQYWGPNY-----------RPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEP- 338
            :::..|:...|||           ||......::..::.:.::      .::...|.|:.|..| 
Mouse    11 SKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQ------IQEFYHGPSSLSTAPY 69

  Fly   339 -------PTYSSPGGLRGY-PSENYSSSG---------------ASGGLSVGAVG-PCTPNP-GL 378
                   ..:..||...|| |.:..|..|               |:.||...|.| ..:|:| .|
Mouse    70 QQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQL 134

  Fly   379 HEW---TGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 440
            ..|   ......|:.|:.||::||||||||||||.|:::::|.|::..|.|||||||||||||||
Mouse   135 FPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 199

  Fly   441 KNKKNSQRQANQQNNNNNSSSN 462
            |.||        :||.:...|:
Mouse   200 KWKK--------ENNKDKFPSS 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 36/55 (65%)
Hoxb8NP_034591.1 Antp-type hexapeptide 134..139 2/4 (50%)
Homeodomain 147..203 CDD:459649 36/55 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..243 4/19 (21%)

Return to query results.
Submit another query.