DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and hoxc10

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001258236.1 Gene:hoxc10 / 100487723 XenbaseID:XB-GENE-486915 Length:351 Species:Xenopus tropicalis


Alignment Length:385 Identity:99/385 - (25%)
Similarity:146/385 - (37%) Gaps:127/385 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 PQQQTPNSVASGA----------SSNLQQQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDI 222
            |...||||....:          |:| |....|..:..:.|..:     ...:.||  .|:::|:
 Frog     4 PNNVTPNSFLMDSLAGSCRGETYSTN-QGMYMQTGSDFSCGMMR-----NCGIVPS--LSKRDDV 60

  Fly   223 N---MSIQLAPLHI-----------------PAIR--AGPGFETDTSAAVKRHTAHWAYNDEGFN 265
            |   :|:...|.::                 |..|  :...|.|:    ||.......|:.    
 Frog    61 NNPGLSLNTYPSYLSQLDSWCEPKNTYRIEQPVARQLSSCSFPTN----VKEENVCCMYST---- 117

  Fly   266 QHYGSGYYDRKHMFA-----YP--YPET-----QFPVGQYW--GPNYRPDQTTSAAAAAAYMNEA 316
                    |::...|     ||  .|||     :.||..|:  ...|..::|.|......:....
 Frog   118 --------DKRAKNATEAALYPNQMPETRSSDHEVPVPSYYRASQGYSMEKTPSCHTTGDFETTF 174

  Fly   317 ERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYP----SENYS-------SSGASGGLSVGAVG 370
            |...|.:||..:          ......||..|:|    ::|.|       ||..:..:......
 Frog   175 ENRTSVSARSEI----------LEQQQAGGKGGFPENTKTDNQSLATNLTTSSATASDIKTEKSL 229

  Fly   371 PC---TPNPGLHE----------------------------WTGQVSVRKKRKPYSKFQTLELEK 404
            |.   .|:.|..|                            |....|.||||.||:|.|||||||
 Frog   230 PAPKLPPSEGDKEPSKNTDTSTDNSDAEAKEDIKAENAAGNWLTAKSGRKKRCPYTKHQTLELEK 294

  Fly   405 EFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSNHN 464
            |||||.|:::::|.|:::::.||:|||||||||||||.||     .|::|.....:||.|
 Frog   295 EFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKK-----MNRENRIRELTSNFN 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 35/52 (67%)
hoxc10NP_001258236.1 COG5576 227..>340 CDD:227863 46/117 (39%)
Homeobox 280..334 CDD:365835 35/53 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 92 1.000 Domainoid score I7474
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D414477at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm47815
Panther 1 1.100 - - O PTHR45874
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.110

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