DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and hoxa11

DIOPT Version :9

Sequence 1:NP_001303472.1 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:XP_002933440.2 Gene:hoxa11 / 100485262 XenbaseID:XB-GENE-483242 Length:359 Species:Xenopus tropicalis


Alignment Length:360 Identity:98/360 - (27%)
Similarity:154/360 - (42%) Gaps:92/360 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 QQLATTPVAGALS---PAQTPTGPSAQ-----QQQHLTSPHHQQLPQQQTPNSVASGASSNLQQQ 187
            |.....|:.|..:   |...||.|::|     .:..|.:|...::.|.::..:.:...:.|::::
 Frog    64 QSCGLFPILGKRNEGIPPNNPTPPTSQSYGPGMEVWLDAPRSCRVGQSESQAATSCSFTQNIKEE 128

  Fly   188 Q-----------QQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGPG 241
            .           :...|...||..::          :|..|.::::.        .:|.    ||
 Frog   129 SSYCLYDSDKCPKGSAATELPGFPRV----------NSEPSPEQNVG--------SVPI----PG 171

  Fly   242 FETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYP---ETQFPVGQYWGPNYRPDQT 303
            :          .....||   |.::.||:|     |:.|..:|   :.:|..         |...
 Frog   172 Y----------FRLSQAY---GSSKGYGNG-----HIVAPQFPAQSQVRFDA---------PASL 209

  Fly   304 TSAAAAAAYMNEAERHVS---AAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLS 365
            :|.....|....||..||   ..::|..|..:.||......|||.     ||:  ||..:.|...
 Frog   210 SSVPTENARKESAESPVSKLPVGSQQRREEETLSSSSAAEESSPA-----PSD--SSKHSPGKEL 267

  Fly   366 VG-AVGPCTPNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTER 429
            || |.|     .....|....|.||||.||:|.||||||||||||.|:::::|.|::|::.|::|
 Frog   268 VGNAKG-----DNAATWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLSDR 327

  Fly   430 QVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSNHN 464
            ||||||||||||.||     .|::|.....::|.|
 Frog   328 QVKIWFQNRRMKLKK-----MNRENRIRELTANFN 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_001303472.1 Homeobox 390..443 CDD:278475 35/52 (67%)
hoxa11XP_002933440.2 Homeobox 288..342 CDD:365835 35/53 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 92 1.000 Domainoid score I7474
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D414477at33208
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 1 1.000 - - otm47815
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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