DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabGGTb and CDC43

DIOPT Version :10

Sequence 1:NP_524894.1 Gene:RabGGTb / 47757 FlyBaseID:FBgn0028970 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_011360.1 Gene:CDC43 / 852722 SGDID:S000003123 Length:376 Species:Saccharomyces cerevisiae


Alignment Length:391 Identity:104/391 - (26%)
Similarity:158/391 - (40%) Gaps:103/391 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ADGGGQKLQFWKHVEYIENH------GKQEDDYEYCMTEFLRMSGIYWGTTALDI---------- 70
            |..|..::...||.::.|.|      ..|..|..       ||:.|::..:.|.|          
Yeast     4 ATNGPSRVVTKKHRKFFERHLQLLPSSHQGHDVN-------RMAIIFYSISGLSIFDVNVSAKYG 61

  Fly    71 --MGQLERLERKSIIEFVKRCQCPNT--GGFA-------PCEGHD-----PHLLYTLSAIQILCT 119
              :|.:.:...|::::     ...||  .||.       |   |.     |:.|:.|.::.:|..
Yeast    62 DHLGWMRKHYIKTVLD-----DTENTVISGFVGSLVMNIP---HATTINLPNTLFALLSMIMLRD 118

  Fly   120 YDALEEI-DREAVVRFVVGLQQPD-GSFF---------GDKWGEVDTRFSFCAVASLTLLG---- 169
            |:..|.| |:.::.|||...|:|| |||.         |......|.||.:.|||.|.:.|    
Yeast   119 YEYFETILDKRSLARFVSKCQRPDRGSFVSCLDYKTNCGSSVDSDDLRFCYIAVAILYICGCRSK 183

  Fly   170 -RMEQTIDVEKAVKFVLS--CCNQTDGGFGSKPGAESHAGLIYCCVGFFSLTHRLHLLDVDKLG- 230
             ..::.||.||.:.:::|  |.|   |.||:.  .|.|:|...|.:...:|...|..|. ||.. 
Yeast   184 EDFDEYIDTEKLLGYIMSQQCYN---GAFGAH--NEPHSGYTSCALSTLALLSSLEKLS-DKFKE 242

  Fly   231 ---WWLCERQLPS-------------------GGLNGRPEKLPDVCYSWWVLASLTIMGRLHW-- 271
               .||..||:.|                   ||..||..|..|.||::|.|.||.::.: .|  
Yeast   243 DTITWLLHRQVSSHGCMKFESELNASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLLTK-DWKM 306

  Fly   272 -ISSEKLQQFILS-CQDTETGGFSDRTGNMPDIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYII 334
             ..:|.:..::|. .|.|.|||||.......|::|:..|...|:|:...    .|..||:||.|.
Yeast   307 LCQTELVTNYLLDRTQKTLTGGFSKNDEEDADLYHSCLGSAALALIEGK----FNGELCIPQEIF 367

  Fly   335 D 335
            :
Yeast   368 N 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabGGTbNP_524894.1 GGTase-II 29..315 CDD:239224 95/362 (26%)
CDC43NP_011360.1 GGTase-I 13..352 CDD:239225 95/360 (26%)

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